PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G08560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 466aa MW: 50526.1 Da PI: 5.8527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 78.5 | 1.5e-24 | 12 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 l pGf+F+P+d+elv+ yL ++++g++l+l+++i ++d +++ Pw+L +++ + +e +fF++++ k+++gkr++r + g+W+ + LPERR07G08560.1 12 LLPGFKFNPSDDELVTSYLLRRLQGNPLPLHSAILDADPLRSPPWKLLAEH-GLGDEGFFFAEARAKNNKGKREKRtVEGGGFWQGQRMCGGGG 104 579***************************999**************7443.445789******************555599**9776654444 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + k L f++ + +kg ++ Wvmhe+++ LPERR07G08560.1 105 V--EGISWSKYLLSFFS-EGEKG-SSGWVMHEFAV 135 4..456899999****4.44443.89*******86 PP | |||||||
2 | NAM | 79.9 | 5.5e-25 | 274 | 397 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 l pGf+F+P+d++lv+ yL ++++g++l+l+ vi ++d++++ Pw+L +++ + +e +fF++ ++k+++gkr++r + g+W+ + + LPERR07G08560.1 274 LLPGFKFNPSDDNLVTSYLIRRLQGNPLPLHGVILDADLLNSPPWKLLAEH-GLGDEGFFFAEVRSKNTKGKRQKRtVEGGGFWQGQRMCGGGC 366 579***************************99***************7443.445789******************555599***998877776 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + k +L f+ ++ +kg ++ Wvmhe+++ LPERR07G08560.1 367 V--EGISWNKYMLSFF-AEGEKG-SSGWVMHEFSI 397 6..567999*******.445554.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-28 | 10 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.473 | 12 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-16 | 14 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.49E-28 | 270 | 416 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.635 | 274 | 416 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-15 | 276 | 397 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MAAVGGADGD SLLPGFKFNP SDDELVTSYL LRRLQGNPLP LHSAILDADP LRSPPWKLLA 60 EHGLGDEGFF FAEARAKNNK GKREKRTVEG GGFWQGQRMC GGGGVEGISW SKYLLSFFSE 120 GEKGSSGWVM HEFAVTSPPE LASSPVRLYR VRFSGHGKKR RREPESDQAA TTAPKRTRAE 180 DALLQELVPP LPALVDVGDG SDGADQGCSS VMDESSMVFG DLPELIDLSA EEAVAAGICS 240 SLEEIQNKSL SGVVDGEAPA LSMVAGGGAD GDGLLPGFKF NPSDDNLVTS YLIRRLQGNP 300 LPLHGVILDA DLLNSPPWKL LAEHGLGDEG FFFAEVRSKN TKGKRQKRTV EGGGFWQGQR 360 MCGGGCVEGI SWNKYMLSFF AEGEKGSSGW VMHEFSITSP PELASSPVRL YRVRFSGHGE 420 NLNLTRLHQQ RPSAQEQRML CFRSSFLFQH WLIAMDLMAP IRAAPA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G08560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638590.1 | 3e-81 | uncharacterized protein LOC107275325 | ||||
TrEMBL | A0A0D9WXL7 | 0.0 | A0A0D9WXL7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G08560.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 6e-15 | NAC domain containing protein 47 |