PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G15350.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 492aa    MW: 51861.2 Da    PI: 6.6052
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G15350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-084184561854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  LPERR06G15350.1 418 MFENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 456
                      57766689*****************************88 PP
2BELL20.61.1e-072923521171
             BELL  11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                      +L +ll+++d++ +q+ +++q  +s F+ ++  g   + + +A +a++  +  ++ +++ +
  LPERR06G15350.1 292 RLRKLLHQMDEKCNQCLDEMQSTASKFNSIIRGGGGGMSAPFAGRAVAATYGRVRRRVMAK 352
                      7889***************************99999*******************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.3E-11236349IPR006563POX domain
PROSITE profilePS5007111.791397460IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-25399473IPR009057Homeodomain-like
SuperFamilySSF466891.8E-15400469IPR009057Homeodomain-like
SMARTSM003895.4E-7400464IPR001356Homeobox domain
CDDcd000869.58E-12400461No hitNo description
PfamPF059201.2E-15417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSSSNPSYHQ MALDAMSCCF VAGAGGAEVA PFLCPNDVAF GFDFGDELAC AVPLRAAMSE  60
EEVNVAAAGG GAESCNTVHS VFPAVADAGS SVVTIAHQPS RIGGETPCAG GGWIYGGRVA  120
PFHDPYYPFA GDGVGLSNTF AAAAAPAAAS ELSLRLGGGA KCSSPSSMAN ASPDVSCSGL  180
THASSGCGGF GYHQAAALFH GAHGEDAGAG ELRQVYHQAQ SPPHFSQAVS RSGVLAHIAQ  240
ELLNGFVSCL LQDVAAASAN AIDGVGGEAM TLPEKDHPYG DGGARWAAEA HRLRKLLHQM  300
DEKCNQCLDE MQSTASKFNS IIRGGGGGMS APFAGRAVAA TYGRVRRRVM AKLVTAAAAQ  360
QRLSPASAAA MEEKERNWES SFIQKHWAMQ QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE  420
NFLRPYPKDS EKDMLAARSG LSRSQVSNWF INARVRLWKP MIEDMYEELK KTSGGSDGVA  480
EMEHLSSKDV IT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G15350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586158e-94AK358615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1080B11.
GenBankAK3601448e-94AK360144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1111H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657056.10.0PREDICTED: uncharacterized protein LOC102715865
RefseqXP_015693999.10.0PREDICTED: uncharacterized protein LOC102715865
TrEMBLA0A0D9WR960.0A0A0D9WR96_9ORYZ; Uncharacterized protein
STRINGLPERR06G15350.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-54homeobox gene 1