PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G11090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 493aa    MW: 55170.8 Da    PI: 8.0532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G11090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-09143163526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C f+++ G C+yG+rC++ H+
  LPERR06G11090.1 143 VCTFYQK-GACSYGSRCRYDHV 163
                      5******.*************7 PP
2zf-CCCH23.31.1e-07276297426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C+ fa+ G C+yG+ C+ +Hg
  LPERR06G11090.1 276 PICS-FAAAGNCPYGEECPQMHG 297
                      6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.859110137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7111135IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5111136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558138165IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4139164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5140162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4143162IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69272299IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4273298IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5276297IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.83E-12331405No hitNo description
Gene3DG3DSA:3.30.40.108.2E-10334400IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.22E-5340400No hitNo description
PROSITE profilePS5008912.297341399IPR001841Zinc finger, RING-type
SMARTSM001842.7E-7341398IPR001841Zinc finger, RING-type
PfamPF000973.2E-7341398IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180365374IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.089428457IPR000571Zinc finger, CCCH-type
SMARTSM003560.0047428456IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MPPAKAESAS RFFPKKSERE RERQRRDAGG EEETHDPSPR AAEGRKGTTT TTGATEQALA  60
PRRDGGGGVS ALSRRAARLV SSAESDRIGS AMSTKSGDSA AFETPSSLIA RIKVLCKFFM  120
HGACLKGEYC EFSHDWSDQP NNVCTFYQKG ACSYGSRCRY DHVKVSRNPT VPPPASSSTS  180
ARTSSSLQPL GFGRLHHMGY QADSNNPRQQ SPHHVGYQAD SSSPREQISM DLLAHSGSKP  240
VWRNDYQHES VLEDWIDWSS NRTVQNQTTL NPADLPICSF AAAGNCPYGE ECPQMHGDLC  300
TTCGKMCLHP YRPDEREEHN KLCEKNHNRL ETLKRSQEIE CSVCLDRVLS KPTAAERKFG  360
LLSECDHPFC ISCIRNWRNN SPTSGMDVNS ALRACPICRK LSYYVIPSVL WYFSKEEKLE  420
IIENYKSKLK SIDCKYFDFG TGTCPFGSSC FYKHAYRDGR LEEVILRHLD ADDGSTVIAK  480
NIRLSDFLSR LRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330335ETLKRS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G11090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1202500.0AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656013.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0D9WPS90.0A0A0D9WPS9_9ORYZ; Uncharacterized protein
STRINGLPERR06G11090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-146C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]