PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 281aa    MW: 30257.1 Da    PI: 5.6555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.25.1e-26103163158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++i+Y g+H++
  LPERR05G22060.1 103 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRntkGCNATKQVQRADGDPLLFDIVYLGDHTC 163
                      58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-2789164IPR003657WRKY domain
SuperFamilySSF1182902.09E-2497165IPR003657WRKY domain
PROSITE profilePS5081121.33398161IPR003657WRKY domain
SMARTSM007743.8E-38103165IPR003657WRKY domain
PfamPF031066.8E-25104163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVELCGEMLA SELGKVQAMA MELERHVDQD SPAAMELCRA LASSVDRSIR LAASCFPPAT  60
ATAMATMSGG GGNAGAASFK KRQGKEKVRK QVRVTSVQDT ASLDDGLSWR KYGQKDILGA  120
KYPRAYFRCT HRNTKGCNAT KQVQRADGDP LLFDIVYLGD HTCGHKSAPP PLAGAVEPVK  180
LPEQQRQQSS LLAAETEGIR QVVEPMASAA APFLFTSTAA AAAGVDVDVS SYFFVSPANS  240
DCQFSSDFSA GSVGIDMDHE ARFEEFFMNT PEFFHSEIQN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22102163768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.11e-127probable WRKY transcription factor 41
TrEMBLA0A0D9WJY80.0A0A0D9WJY8_9ORYZ; Uncharacterized protein
STRINGLPERR05G22060.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-31WRKY DNA-binding protein 46