PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G19900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 209aa MW: 22537.8 Da PI: 7.6527 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.7 | 1.8e-31 | 122 | 180 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+Hnh LPERR05G19900.1 122 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTTYEGTHNHV 180 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 108 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-28 | 114 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.548 | 117 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-35 | 122 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-25 | 123 | 179 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAAVGAHAAL YHHDAAYSMS SYYSHGGSST SSSSSSFSAA LAAPPPPPPI ADPSGGAQFD 60 ISEFFFDDDA PPPPQPPANV FNAAARATRS VAEVVPVPAP AAMERPRTER IAFRTRTEIE 120 ILDDGYKWRK YGKKSVKNSP NPRNYYRCST EGCNVKKRVE RDKDDPSYVV TTYEGTHNHV 180 SPSTVYYASQ DAASGRFFVA GTQPPGSLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-26 | 112 | 183 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-26 | 112 | 183 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G19900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837881 | 0.0 | CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence. | |||
GenBank | DQ298179 | 0.0 | DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006654710.1 | 1e-97 | PREDICTED: probable WRKY transcription factor 26 | ||||
TrEMBL | A0A0D9WJ39 | 1e-150 | A0A0D9WJ39_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G19900.1 | 1e-151 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 4e-41 | WRKY DNA-binding protein 50 |