PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 346aa    MW: 36733.6 Da    PI: 7.4962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26177236258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H +
  LPERR05G09170.1 177 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGNHSC 236
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-26169236IPR003657WRKY domain
SuperFamilySSF1182904.05E-24174236IPR003657WRKY domain
SMARTSM007745.2E-36176238IPR003657WRKY domain
PROSITE profilePS5081121.609177235IPR003657WRKY domain
PfamPF031061.6E-24177236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDEVLAQISE GFRLAGELMS ELPATQNDPG YLASRCLAIA DAYSAAVRAL QARHGASVDV  60
ATPFGGEGYL QQQQHHRPPL DFLRVCCSPE AAAGAGASTF LAAPPPSASY AWAPSDAYGA  120
GTSGGPVRRV SSSSRSPPSP SPVQPRQPGG RRRRENGEKV TVMVAAQRTG NTDLPPDDGY  180
TWRKYGQKDI LGSRYPRSYY RCTHKNYYGC EAKKKVQRLD DDPFTYEVTY CGNHSCLTST  240
TPLLTLPTAT AAAAAVTNSP ANADRQQQQP LSTSIHLGIS WPTMAPATAS QFAGVGEGRT  300
SAATAARDST DHFPVADLAD VMFNSGSSGG SSILDGIFSS HDRRDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20177236968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878171e-147AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566384.31e-116WRKY transcription factor 55
TrEMBLA0A0D9WF310.0A0A0D9WF31_9ORYZ; Uncharacterized protein
STRINGLPERR05G09170.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-40WRKY DNA-binding protein 55