PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 307aa    MW: 32140.5 Da    PI: 5.0301
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.5e-23123184159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg +WrKYGqKe+++s++p++Y+rCt++   +C ++++v+r+++d+  + +tY g+H+++
  LPERR05G09130.1 123 LDDGQAWRKYGQKEIQNSKHPKAYFRCTHKydqHCAAQRQVQRCDDDEASFRVTYIGKHTCR 184
                      58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-25111186IPR003657WRKY domain
SuperFamilySSF1182903.01E-23121186IPR003657WRKY domain
PROSITE profilePS5081120.426123186IPR003657WRKY domain
SMARTSM007748.3E-33123185IPR003657WRKY domain
PfamPF031061.6E-21124184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSSSMAPAPP PYAQVMEDME KGQELAAKLQ VLLRDSPDAS HIVDQIILSF ARTMSALDKA  60
VLAAIAGAGE GSEVQSEVTC AGVGSSAGGK RKAAAGGAAA DRRANCRRRT QQSSGETVIL  120
KNLDDGQAWR KYGQKEIQNS KHPKAYFRCT HKYDQHCAAQ RQVQRCDDDE ASFRVTYIGK  180
HTCRDPATNA ATHQIAACAG DDDGGLHAGS RLISFGAGAA DPTASTTTTT GTAPGPMLQP  240
LKVESGVGCD QEEVLSSLTP GGGGGAGAFG PDQGDVTSSL HWSYDGGAGM EFFRDDDGVF  300
DLDDLWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-40117184269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637594.11e-140probable WRKY transcription factor 70
TrEMBLA0A0D9WF270.0A0A0D9WF27_9ORYZ; Uncharacterized protein
STRINGLPERR05G09130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-24WRKY DNA-binding protein 70