PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G04920.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 226aa    MW: 25068.7 Da    PI: 5.3771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G04920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30129187159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver++ed ++v++tY g Hnh 
  LPERR05G04920.1 129 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCNVKKRVERDREDDRYVITTYDGVHNHA 187
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32117189IPR003657WRKY domain
SuperFamilySSF1182902.22E-27121189IPR003657WRKY domain
PROSITE profilePS5081131.686124189IPR003657WRKY domain
SMARTSM007745.0E-35129188IPR003657WRKY domain
PfamPF031061.4E-23130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDHEGAKALC IIALRRDIIY SEYFSSKHSA MAVSIGLNPE AFFSSYSCSS SSSPFMASYT  60
PEFSAAATDI DFSGELDFDY SLPAPDFAGT VSDEYPDNES IMMRCENEEK RARVNGRIGF  120
RTRSEVEILD DGFKWRKYGK KAVKNSPNPR NYYRCSSEGC NVKKRVERDR EDDRYVITTY  180
DGVHNHASPG AAAAALQYYT AGDYYSPPRS SAGSPPAAYS AGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25115189377Probable WRKY transcription factor 4
2lex_A2e-25115189377Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G04920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8328021e-127CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654120.13e-95PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0D9WDI41e-165A0A0D9WDI4_9ORYZ; Uncharacterized protein
STRINGLPERR05G04920.11e-166(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-30WRKY DNA-binding protein 50