PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G22000.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 439aa    MW: 46186.5 Da    PI: 7.8746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G22000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-053313681254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYI+ L
  LPERR04G22000.1 331 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 368
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.846319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-5329372No hitNo description
SuperFamilySSF474599.81E-11329382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-8329377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDHQMMHAS PAAMYNGRGG GVWWNNAVTC STTSELAGGG YNTAAWSSAL AAAGYDVMAA  60
TDNNNNNNNN GGKAAKSNTT ASSESPGNTS SITFQEPTSI ADVAAVPQPA GLAGFTDWTH  120
PFMTNNGAAG LHEFLQDHGG HHDPMMNNAP SNNLALQQDH HHQLLSSFGS DLLLSPTSPY  180
GGFQSSLLLR SLMEPTPTPA KQQPGLGGIQ QYQYQQQMGQ ASPAAAAAAK FAQAVGARDS  240
LQFNNDAPFW NPSSASFGMA AAAAVNDQST VARVAKRSSP AQPRAATLAL KTALEGVGDS  300
SSVVSKKANG EPAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE  360
TIEYIRFLHD QVGALSAPYL KNGAHQVPHL KNSSPDKSKH GEISLKGRGL CLVPISSTFA  420
VASEVPVELW TPFGANFIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G22000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0D9W9Y50.0A0A0D9W9Y5_9ORYZ; Uncharacterized protein
STRINGLPERR04G22000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-49bHLH family protein