PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G12480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 769aa    MW: 80291.2 Da    PI: 7.028
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G12480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30304360259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C vkkkvers+ +++v+ei+Y+g+H h 
  LPERR04G12480.1 304 EDGYSWRKYGQKQVKHSEYPRSYYKCTHANCVVKKKVERSH-EGHVTEIIYKGTHSHA 360
                      8****************************************.***************7 PP
2WRKY105.23.5e-33529587159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+Hnhe
  LPERR04G12480.1 529 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCLVRKHVERASHDLKSVITTYEGKHNHE 587
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.01298362IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-26301362IPR003657WRKY domain
SuperFamilySSF1182903.4E-24302362IPR003657WRKY domain
SMARTSM007743.0E-32303361IPR003657WRKY domain
PfamPF031061.2E-22304359IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-37514589IPR003657WRKY domain
SuperFamilySSF1182906.15E-29521589IPR003657WRKY domain
PROSITE profilePS5081137.7524589IPR003657WRKY domain
SMARTSM007749.2E-39529588IPR003657WRKY domain
PfamPF031064.7E-25530587IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MDGDIAMEEW KDPNQRGSDY LMPAMPAFLE DEFPPAEDGF GEDGGGFEKH GLSVAVGSPP  60
PHPREDGHSP SPVPPPTPQF FQKPHFGGGG GSLADRRARG GGGFSNVTKL SVPSNPPAVA  120
DVSPALAPSP YVTIPPGLSP TTLLESPIFL SNSMGQASPT TGKLHMHDGA DDNDPIRFET  180
PPIEEGVVSG AFSFKPLNLK FSHYMTEAKT ESHPNNQHQI SVKTEANIQT AQEATNLQSQ  240
SQSQLMQQQQ QLNGHSVPKS SSSCKPSRPA PDTAAAGGGG GGDGASPPDH GQPSAAAAIA  300
PVAEDGYSWR KYGQKQVKHS EYPRSYYKCT HANCVVKKKV ERSHEGHVTE IIYKGTHSHA  360
MPTPPPPPPP PTTTASAARR PPPQTTTTDH TAAAARRPPP QTTTTDHTAA PPDAAGQPWH  420
QEVRAGGEGG LEVTSSPSVP GELCDSTASP DHAVDMTSAA SDEVDRGDSK AAHVPPHAAG  480
AGADSESEEM ERKRRKLESS CGVDMSAVAS RAVREPRVVI QTTSEVDILD DGYRWRKYGQ  540
KVVKGNPNPR SYYKCTHPGC LVRKHVERAS HDLKSVITTY EGKHNHEVPA ARNSAGAGGG  600
HQAAVASSQQ HHVGVGGGRR PEVPSVQDSL MRLGCGGAVA PPFAPHFAGL HLPLPPPTTA  660
RDPLAPMSNF PYSFGHVAGL PPVPPPAGIA GVEGLKYPML GAPPSVHPLL RHRQGGGAGG  720
GVETVIPKGE VKQEAMAPAG GGGGAVAGAG RGAAVYQQAM SRVSLGNQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36302590878Probable WRKY transcription factor 4
2lex_A8e-36302590878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G12480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
RefseqXP_015634498.10.0WRKY transcription factor SUSIBA2 isoform X1
TrEMBLA0A0D9W6480.0A0A0D9W648_9ORYZ; Uncharacterized protein
STRINGLPERR04G12480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-46WRKY DNA-binding protein 2