PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G05440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 604aa    MW: 67423.4 Da    PI: 10.0721
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G05440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.5e-13200294399
                      EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      kvl+ps+  ++    ++ + a++     g ++     ++ ++ g+ W+v++    +  +gr +l++GW eF+ a+gL +g fvv++++g  ++ 
  LPERR04G05440.1 200 KVLMPSSFRNL---HISDELAAQLlcgAGAPRA--AARVVSPFGKLWDVEVVGprDVEGGRAFLGRGWPEFAAAHGLGVGWFVVLRHQG--GGV 286
                      66666666554...4888888777886334333..69999***********7788999999*************************765..777 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      l+vkvf++
  LPERR04G05440.1 287 LTVKVFDT 294
                      8****997 PP
2B341.13.1e-133374151596
                      -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++p kf+++h  +++ +s++  + ++ g++W+++l  +kk  ++++++GW++F + +++  gD+++++++g+  f  ++kv
  LPERR04G05440.1 337 KMRIPDKFLQHHiTEEHLNSIMAYILSPLGKVWRIEL--EKKEFGMFFKGGWSQFLSFHDISHGDVILLRYEGNLVF--KIKV 415
                      489******99996667799*****************..999999*************************9997766..5555 PP
3B361.81.1e-19504600496
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      ++++++ l++g++++p +f++++g+++++ +tl+++d++g      sW+v ++++k++++  y++++GWk+F+k+n Lk gD+++F +++   +
  LPERR04G05440.1 504 KELNKYILQRGNVSFPGTFCKSIGLVEKGIVTLMVKDSKGrccsrWSWDVAVSVNKNGQGccYLFGTGWKKFCKENSLKLGDVCIFNVVE---T 594
                      55689999********************************9999889*****9999999999************************9654...4 PP

                      ..EEEE CS
               B3  91 elvvkv 96 
                      +l++ v
  LPERR04G05440.1 595 TLWHVV 600
                      455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0019198295IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-12199297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-11200295IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10200294IPR003340B3 DNA binding domain
CDDcd100173.49E-10200293No hitNo description
PROSITE profilePS5086310.01238295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16319419IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17321419IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.688323419IPR003340B3 DNA binding domain
CDDcd100175.40E-14324416No hitNo description
SMARTSM010191.1E-8326419IPR003340B3 DNA binding domain
PfamPF023623.6E-11336413IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-16497603IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011501604IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16502602IPR015300DNA-binding pseudobarrel domain
CDDcd100171.98E-11502589No hitNo description
SMARTSM010191.3E-7502604IPR003340B3 DNA binding domain
PfamPF023623.1E-17506603IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MEIEPPWSFG RQGIGHRWMV EQRETGERWR MGRFGADVLH ERGLNSPVRR GALLLAGADI  60
PCRPCAADEA FRDRAAALFL AALAAAASFP TMCLASFRCG CEKDSETYGY LRGETRGKGR  120
DFADFWRQNR QSKSPLRFWS QTHPSSGARS FSTCNSRQQR IDEAASPSVA AVGRFTSSGP  180
VMPSPPCVDH GGAAKVTQLK VLMPSSFRNL HISDELAAQL LCGAGAPRAA ARVVSPFGKL  240
WDVEVVGPRD VEGGRAFLGR GWPEFAAAHG LGVGWFVVLR HQGGGVLTVK VFDTTLCLND  300
FGASLAAAVV AARCGRSRDA PHKPQFLRIL LPGYMEKMRI PDKFLQHHIT EEHLNSIMAY  360
ILSPLGKVWR IELEKKEFGM FFKGGWSQFL SFHDISHGDV ILLRYEGNLV FKIKVFGLNG  420
LKKDLKTKHY IIQHNTENKQ EPSSFSRSKS NPKNRRCGED NENQQEIPCS RKGSSKKRRS  480
GGETERQRRS KSLYQIEPPS WIMKELNKYI LQRGNVSFPG TFCKSIGLVE KGIVTLMVKD  540
SKGRCCSRWS WDVAVSVNKN GQGCCYLFGT GWKKFCKENS LKLGDVCIFN VVETTLWHVV  600
IERS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G05440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691403.11e-119PREDICTED: putative B3 domain-containing protein Os04g0346900
RefseqXP_025880727.11e-116LOW QUALITY PROTEIN: putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS741e-173Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0D9W3K70.0A0A0D9W3K7_9ORYZ; Uncharacterized protein
STRINGLPERR04G05440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-17B3 family protein