PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G29190.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 364aa    MW: 38680.2 Da    PI: 8.5557
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G29190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.3e-33134191259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  LPERR03G29190.1 134 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 191
                      8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33118192IPR003657WRKY domain
SuperFamilySSF1182901.96E-28125192IPR003657WRKY domain
PROSITE profilePS5081129.964128193IPR003657WRKY domain
SMARTSM007748.6E-39133192IPR003657WRKY domain
PfamPF031065.5E-26134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAGAAGGGQE GIAAGGGGGG DWSLFDGDAF GEYSSAVLAE LGGWAPAAEM GMMPALDLPD  60
DVAAADAPAR SGDGAAASSS SSGDPAGAPP ENADNQQPAA EAATPASASA KKGQKRARQP  120
RFAFMTKSEI DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSDDPSVV  180
ITTYEGQHCH HTASFHRGFA GAAAQIHGPA AVALAEQMSA FVSPPPLLYS NNLPRLQPQV  240
INPPSSSETT VVSNSMSTTA SLQELNNNST SYSSSAVTIA QSPPSASAAA AMFLRHMRDY  300
YILKRRLIYT SYMTTVPFRF ICRLGGKWLE GRSRRSIGFF IRADQSTESA IIYLSNGLEV  360
RIIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-241261901074Probable WRKY transcription factor 4
2ayd_A4e-24121190271WRKY transcription factor 1
2lex_A4e-241261901074Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G29190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418591e-148AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690361.16e-98PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 57
TrEMBLA0A0D9VZ800.0A0A0D9VZ80_9ORYZ; Uncharacterized protein
STRINGLPERR03G29190.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-53WRKY DNA-binding protein 57