PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G21810.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 264aa    MW: 30190.2 Da    PI: 10.1459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G21810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18361081795
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++p+ f+ ++ggk   +k +tle+++g +++v++  +k+s++++l++GW ++++a++Lk gD +vFk+ g+s f  +  
  LPERR03G21810.1  36 TIPNGFLYNFGGK--IPKSVTLETSNGLTFDVQV--NKNSDEVFLQSGWTSYARAHDLKRGDLLVFKYCGNSLF--KTL 108
                      79*****888988..6678***************..********************************998877..444 PP
2B349.57.6e-161982633399
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + +  + +++g++W+v+++++kk++r +l+ GW +F+++n+L+ gD+++F+l ++ ++  ++v+++rk
  LPERR03G21810.1 198 D-ETLVLQRRGKRWNVRCKITKKKSRRFLK-GWMQFARDNNLCLGDICLFELLENkTKYVMKVHILRK 263
                      2.4556778*********997777776666.********************99887888889999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.02523113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-1636115IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-1636107IPR003340B3 DNA binding domain
CDDcd100178.69E-1436111No hitNo description
SuperFamilySSF1019364.51E-1836115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.78737113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21159263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20160263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294168264IPR003340B3 DNA binding domain
SMARTSM010192.5E-9169264IPR003340B3 DNA binding domain
CDDcd100178.19E-17171262No hitNo description
PfamPF023622.7E-13185263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MQICTCCSLT GMSGRKMNRG GVRSKEGGER CKEGDTIPNG FLYNFGGKIP KSVTLETSNG  60
LTFDVQVNKN SDEVFLQSGW TSYARAHDLK RGDLLVFKYC GNSLFKTLIF NPNGCEKACS  120
YLLKKNVTQE CDLVPGCITP AGYRLTRSQK KIMNKKTKAI NSENPIYGYV IIKSSIYGRP  180
CTVEFSRKYA DVYLPFEDET LVLQRRGKRW NVRCKITKKK SRRFLKGWMQ FARDNNLCLG  240
DICLFELLEN KTKYVMKVHI LRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G21810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.11e-101putative B3 domain-containing protein Os03g0621600
SwissprotQ851V11e-103Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VWG80.0A0A0D9VWG8_9ORYZ; Uncharacterized protein
STRINGLPERR03G21810.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein