PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G21480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 21273.3 Da PI: 9.13 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs+ L H +H LPERR03G21480.1 62 HRCSVCGKAFSSYQALGGHKTSH 84 79**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 59 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.03E-9 | 61 | 84 | No hit | No description |
Pfam | PF13912 | 2.5E-12 | 62 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.863 | 62 | 89 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.03E-9 | 118 | 145 | No hit | No description |
Pfam | PF13912 | 3.4E-14 | 122 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 123 | 145 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 123 | 145 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 145 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVDIMMSPPA SGEEGQMGWS KRRRSRRHGR APAPPTEEEH LALSLLMLAR GHRDPASPEQ 60 QHRCSVCGKA FSSYQALGGH KTSHRPKTPP TATTAPAIVV DAPAAATASP AASSSNSGGN 120 RVHECSVCKK TFPTGQALGG HKRCHYEGPI GAAAAVAGRV FDLNLPAVEV MTDRCLLPAA 180 AGEEDEVLSP LAFKKPRLMI PA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G21480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629276.1 | 1e-65 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 2e-43 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A0D9VWC5 | 1e-145 | A0A0D9VWC5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G21480.1 | 1e-146 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-34 | C2H2 family protein |