PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G11180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 290aa    MW: 31299.2 Da    PI: 9.3508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G11180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000421742121154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +R +++ +++  L++l+ +      +K + a++L +A  +I++L
  LPERR03G11180.1 174 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRQL 212
                      6889999**********999.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.763163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-5174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-8174225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MWNCYAPSSL LLPLSDDYVK CEASNSPART TDFERMLAAA PDYDLFRHMS FSPPPENLQS  60
PTLFTTRSSE NYLGENSIYG AVARPPYTQL SYPQPTAATA TFTPVTVILF TYLKTLHLAR  120
WTAASEPMIP DGDGSGFRSS KRLKTATTAT TQNPRHGLKC HAKPRNQPAK AACKRSQKLG  180
DKITALQQLV SPYGKTDTAS VLHEAAACIR QLHHQIQILT APYSGTSPSS SSASQQDAGG  240
GGGATTELRR RGLCVAALSP AVVSLVAEGA ANGHRRADVE DQRRSWFSGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G11180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839429e-31AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370699e-31AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149599e-31AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126119e-31CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630128.11e-130transcription factor bHLH110 isoform X2
RefseqXP_025879589.11e-130transcription factor bHLH110 isoform X2
TrEMBLA0A0D9VSK70.0A0A0D9VSK7_9ORYZ; Uncharacterized protein
STRINGLPERR03G11180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-15bHLH family protein