PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G09180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 372aa    MW: 36963.5 Da    PI: 5.4053
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G09180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.34.6e-3550108462
           zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      ++ +cprC+s +tkfCy+nnys++qPryfC+ CrryWt GGalrnvP+Ggg+rk ++ss
  LPERR02G09180.1  50 STPECPRCKSCKTKFCYFNNYSVAQPRYFCRDCRRYWTMGGALRNVPIGGGCRKVRRSS 108
                      5679**************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088427.49352106IPR003851Zinc finger, Dof-type
PfamPF027012.8E-2952106IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-2253106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105490IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MASGKMVVVV EGKLAAKSSK KVQIVDEAVL AEQRRAEEAA REVEEEMKKS TPECPRCKSC  60
KTKFCYFNNY SVAQPRYFCR DCRRYWTMGG ALRNVPIGGG CRKVRRSSSS AASSSAAAAA  120
QTAAAAPVVV AAPPVSSPPP PAMPSLSAAI SNLLQTEPMV APCSDFPNVL PTFVSTGYEH  180
ADGDHLSQGS FGNFGGGNLA PAMSAGAVAV GGVTSSSLME MLRAIGGGIF EVGSSSNAGA  240
GGVYYPPAGN GMMAPLFTGS LMQQGMQGLF TGGATNNAIA GGGGGVINNP GEEGGVMGWP  300
APAIGAGAEE ENHAGDVGGD VMKEDTGASS SGGGGGAGCY GWNTGGAAAG GSGGAGAAPW  360
QGLIDGSAAA MM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA consensus core sequence 5'-AAAG-3' also known as prolamin box (PubMed:16798940). Can activate the expression of genes encoding for the seed storage proteins glutelin, prolamin and globulin. Functions synergistically with RISBZ/BZIP58 to positively regulate quantitatively many seed storage proteins (PubMed:16798940, PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate some metabolic enzymes, such as alanine aminotransferase and pyruvate phosphate dikinase, that are expressed in developing seeds (PubMed:16798940). Functions synergistically with RISBZ1/BZIP58 to positively regulate genes that are key players in the development of aleurone layers (PubMed:19473328). Functions synergistically with RISBZ1/BZIP58 to positively regulate the glutelin GLUD-1 gene in endosperm of developing seeds (PubMed:18980953). Can activate the expression of the bifunctional lysine-degrading enzyme, lysine ketoglutarate reductase/saccharopine dehydrogenase (LKR/SDH), one of the key regulators determining free lysine content in plants (PubMed:21037241). In germinating seeds, involved in the gibberellin-mediated activation of the alpha-amylase AMY1.1/AMY1A gene (PubMed:14500792). {ECO:0000269|PubMed:14500792, ECO:0000269|PubMed:16798940, ECO:0000269|PubMed:18980953, ECO:0000269|PubMed:19473328, ECO:0000269|PubMed:21037241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G09180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159, ECO:0000269|PubMed:16798940}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623741.11e-77dof zinc finger protein 3-like
SwissprotQ6K5371e-78DOF3_ORYSJ; Dof zinc finger protein 3
TrEMBLA0A0D9VEC70.0A0A0D9VEC7_9ORYZ; Uncharacterized protein
STRINGLPERR02G09180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173981010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-28Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Washio K
    Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone.
    Plant Physiol., 2003. 133(2): p. 850-63
    [PMID:14500792]
  3. Yamamoto MP,Onodera Y,Touno SM,Takaiwa F
    Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.
    Plant Physiol., 2006. 141(4): p. 1694-707
    [PMID:16798940]
  4. Kawakatsu T,Yamamoto MP,Hirose S,Yano M,Takaiwa F
    Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm.
    J. Exp. Bot., 2008. 59(15): p. 4233-45
    [PMID:18980953]
  5. Kawakatsu T,Yamamoto MP,Touno SM,Yasuda H,Takaiwa F
    Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.
    Plant J., 2009. 59(6): p. 908-20
    [PMID:19473328]
  6. Kawakatsu T,Takaiwa F
    Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.
    Plant Cell Physiol., 2010. 51(12): p. 1964-74
    [PMID:21037241]
  7. Gaur VS,Singh US,Kumar A
    Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.
    Mol. Biol. Rep., 2011. 38(4): p. 2827-48
    [PMID:21113680]
  8. Schmidt R, et al.
    SALT-RESPONSIVE ERF1 is a negative regulator of grain filling and gibberellin-mediated seedling establishment in rice.
    Mol Plant, 2014. 7(2): p. 404-21
    [PMID:24046061]
  9. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]
  10. Sutoh K, et al.
    An N-terminal region of a Myb-like protein is involved in its intracellular localization and activation of a gibberellin-inducible proteinase gene in germinated rice seeds.
    Biosci. Biotechnol. Biochem., 2015. 79(5): p. 747-59
    [PMID:25559339]