PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G00980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 866aa    MW: 98109 Da    PI: 7.5363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G00980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05557579123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  LPERR02G00980.1 557 HTCQECGASFQKPAHLKQHMQSH 579
                      79*******************99 PP
2zf-C2H221.75.1e-07585609123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s++rk++L+rH+ +H
  LPERR02G00980.1 585 FICPleDCPFSYRRKDHLNRHMLKH 609
                      78*********************99 PP
3zf-C2H215.45.3e-05614639123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ Fs k n +rH +  H
  LPERR02G00980.1 614 FTCTmeGCGRKFSYKANIQRHVKEiH 639
                      89********************9988 PP
4zf-C2H214.40.00011651675123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + C+   C+k F+  s Lk+H  +H
  LPERR02G00980.1 651 FICKeeGCNKAFKYASRLKKHEESH 675
                      789999***************9988 PP
5zf-C2H2163.3e-05742766223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+   C  sFs+ksnL++H++  H
  LPERR02G00980.1 742 RCSfeGCECSFSNKSNLTKHMKAsH 766
                      688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484522.88E-531100IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.73565IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.8E-1244100IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.57266100IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.8E-12135185IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.81136170IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.88E-5137176IPR011990Tetratricopeptide-like helical domain
PfamPF015353.3E-5138166IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.5E-6138166IPR002885Pentatricopeptide repeat
PfamPF130412.7E-7197245IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.479198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-5200233IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.914268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.8E-12271338IPR011990Tetratricopeptide-like helical domain
PfamPF015350.015273296IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.88E-5275310IPR011990Tetratricopeptide-like helical domain
PfamPF130414.1E-12298345IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.299299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-8301334IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.374334364IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.88E-5370464IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.136370400IPR002885Pentatricopeptide repeat
PfamPF015350.011373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.107.8E-12400465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.404402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.881436470IPR002885Pentatricopeptide repeat
PfamPF015350.56445467IPR002885Pentatricopeptide repeat
SMARTSM0035516511533IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-5554576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017557579IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547557584IPR007087Zinc finger, C2H2
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-10570611No hitNo description
Gene3DG3DSA:3.30.160.601.3E-11577611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2E-4585609IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099585614IPR007087Zinc finger, C2H2
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-8595644No hitNo description
Gene3DG3DSA:3.30.160.601.6E-6612641IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.5E-4614639IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.549614644IPR007087Zinc finger, C2H2
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-7647675IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0049651675IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.512651675IPR007087Zinc finger, C2H2
PROSITE patternPS000280653675IPR007087Zinc finger, C2H2
SMARTSM0035515683708IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280685708IPR007087Zinc finger, C2H2
SMARTSM0035510711732IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.31E-8722781No hitNo description
Gene3DG3DSA:3.30.160.602.3E-6723763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0022741766IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344741771IPR007087Zinc finger, C2H2
PROSITE patternPS000280743766IPR007087Zinc finger, C2H2
SMARTSM003553.6772798IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280774798IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MNRSVCHHLL TQIKTTRELQ RIHAQALIHG LHPNNQSISC KIFRSYAEFG RPADAHRLFD  60
EIPHPDIISY TSLMSLHLQL DYHQNAISVF SRAIASGHRP DGFAAVGALS ASGGLGDQRI  120
GRVVHGLIFR CGLDSELVVC NALIDMYCRC GSFGSARAVF DRMLQKDEIT WGSMLYGYMK  180
CAGADSALSF FYQMPKKNTV SWTTLITGHV QDKQPIQALE LFGRMLLEGH RPTHFTIVGV  240
LSACADIGAL DLGRAIHGYG SKCNATTNII VTNSLMDMYA KSGSIAMAFS VFEEAQAKDT  300
FTWTTMISSF TVQGDGRKAV ELFQDMLRSG ILPNSVTFVS VLSACNHAGL IQEGRDFFDK  360
MREVYQINPR LEHYGCMVDL LGRAGLLEEA EALIDHMDME PDVVIWRSLL SSCLAQGNNR  420
LAEIAGKEVI KKEPGDDGVY VLLWNMYASS NRWKEALDMR KQMLSRKIYK KPGCSWIEVD  480
GVVHEFLMCS GDEIDGDTSV EATHYRDIRR YKCEFCPIVR SKKCLIRAHM VAHHKEELDK  540
SEIYDSNGEK MVHEGDHTCQ ECGASFQKPA HLKQHMQSHS DERSFICPLE DCPFSYRRKD  600
HLNRHMLKHE GKLFTCTMEG CGRKFSYKAN IQRHVKEIHE DENAAKSNQQ FICKEEGCNK  660
AFKYASRLKK HEESHVKLDY VEVVCCEPDC MQMFTNVECL RAHNQACHQY VECDICGEKY  720
LKKNIKRHLR AHEGALPTER TRCSFEGCEC SFSNKSNLTK HMKASHDQVK PFACRFTGCD  780
KVFPYKHVRD NHEKSSAHVY TQANFVEMDE QLLSCPRGGR KRKAVTVETL TRKRVTMHGD  840
VSSLDNGTEY LRWLLSGGND DSSHTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D3e-572041815334PLS9-PPR
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G00980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041210.0AP004121.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1442_E05.
GenBankAP0048670.0AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878917.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A0D9VBB70.0A0A0D9VBB7_9ORYZ; Uncharacterized protein
STRINGLPERR02G00980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-113transcription factor IIIA