PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G40130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23291.6 Da PI: 10.9674 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.7e-21 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie++ rqv fskRr+g +KKA+ELS+LC a+v ++fs+ gk y + LPERR01G40130.1 20 RIESEEARQVCFSKRRAGFFKKASELSILCSADVVAVVFSPAGKAYSF 67 8*******************************************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.848 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-26 | 11 | 83 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-30 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.17E-36 | 12 | 83 | No hit | No description |
PRINTS | PR00404 | 1.3E-19 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-24 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVVPARRRPS LGRQKIEIRR IESEEARQVC FSKRRAGFFK KASELSILCS ADVVAVVFSP 60 AGKAYSFGHP SVDYLLERFM GPNTGNNNND TSRPGVQVRR GRMVDKLNRQ YGEVRAVVEA 120 QRARQETLDE LMDRERAARS RPAAWIDADV AHMSAEELVA FGARLMAVQD GVVARADQML 180 RDALLIGRPP TNTNSRARGG GFFHLHHF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G40130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005789 | 1e-75 | AP005789.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0563F09. | |||
GenBank | AP005884 | 1e-75 | AP005884.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0598D02. | |||
GenBank | AP014965 | 1e-75 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-75 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640475.1 | 5e-86 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0D9VAY3 | 1e-150 | A0A0D9VAY3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G40130.1 | 1e-151 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 1e-28 | AGAMOUS-like 23 |