PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G26540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 304aa    MW: 33030.5 Da    PI: 4.7033
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G26540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.2e-3090148259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  LPERR01G26540.1  90 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 148
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-3187150IPR003657WRKY domain
SuperFamilySSF1182904.45E-2688150IPR003657WRKY domain
SMARTSM007742.9E-3689149IPR003657WRKY domain
PROSITE profilePS5081131.86990150IPR003657WRKY domain
PfamPF031063.0E-2691148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDRSTSGEDG SCSAGTDSPS PREESVDEQG AAEESSPAPG GLKRELPSPS SPLPPPAKRS  60
RRSVEKRVVS VPIAECGDRP KGAGEGPPPS DSWAWRKYGQ KPIKGSPYPR GYYRCSSSKG  120
CPARKQVERS RADPTVLLVT YSFEHNHPWP QPKSSSCHAS KSSPRLTTAP KPEPAADDQE  180
HPDPAENESS SVELDVPEKE PEPVVKQEQE MEQKVAVIEP AAAVTATVAP AAVEVEEENL  240
DFGWIDQYHP TWHRSYAPLM PPEEWERELQ GDDALFAGLG ELPECAVVFG RRRELSMAAT  300
APCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-2066150679Disease resistance protein RRS1
5w3x_D7e-2066150679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G26540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0673290.0AK067329.1 Oryza sativa Japonica Group cDNA clone:J013100D22, full insert sequence.
GenBankAY8706020.0AY870602.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
GenBankCT8415830.0CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.11e-149probable WRKY transcription factor 65
TrEMBLA0A0D9V5N50.0A0A0D9V5N5_9ORYZ; Uncharacterized protein
STRINGLPERR01G26540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-38WRKY DNA-binding protein 65