PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G24650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 222aa MW: 23907.8 Da PI: 8.3138 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.2e-30 | 136 | 194 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Y g Hnh LPERR01G24650.1 136 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRNDPRYVVTMYDGIHNHV 194 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-31 | 123 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 129 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.066 | 131 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-32 | 136 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-23 | 137 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAAATGASTP FNFCPHAADV VLSSWMATRP PAPHGGGAFG VAASSGEMML RQQHLDLFDY 60 LSDDQGGAGP ARPAAVPSAS SLFMPPPAMA PAEPVVPDAA AGYPRRVNLL AAAGEGGTTR 120 TTDKIAFRTR SDDEILDDGY KWRKYGKKSV KNSPNPRNYY RCSTEGCNVK KRVERDRNDP 180 RYVVTMYDGI HNHVCPGTVY YATQDAASGR FFVAGMHHPD LN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-23 | 126 | 196 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-23 | 126 | 196 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G24650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108555 | 1e-136 | AK108555.1 Oryza sativa Japonica Group cDNA clone:002-144-E10, full insert sequence. | |||
GenBank | AY870609 | 1e-136 | AY870609.1 Oryza sativa (japonica cultivar-group) WRKY26 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008675106.1 | 2e-82 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A0D9V4X0 | 1e-164 | A0A0D9V4X0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G24650.1 | 1e-164 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-35 | WRKY DNA-binding protein 50 |