PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G11010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 503aa MW: 55613.8 Da PI: 8.631 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 8.7e-15 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 kri +s r tf kRr g++KKA EL LC++ v+v +++++ LPERR01G11010.1 9 KRIAKNSTRRLTFKKRRSGLIKKARELASLCGIGVCVAVYGES 51 789999999********************************86 PP | |||||||
2 | SRF-TF | 60.6 | 1.8e-19 | 192 | 232 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ri n+ r tf kRr g++KKA+ELS+LCd+e+++++f++ LPERR01G11010.1 192 RIANDATRRATFKKRRRGLMKKASELSTLCDVEACLVVFGE 232 899************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.278 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.58E-24 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-20 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-14 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.913 | 183 | 232 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-21 | 183 | 242 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-11 | 185 | 205 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-25 | 186 | 277 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.06E-32 | 186 | 267 | No hit | No description |
Pfam | PF00319 | 9.9E-19 | 192 | 232 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-11 | 205 | 220 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-11 | 220 | 241 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MARNKIVLKR IAKNSTRRLT FKKRRSGLIK KARELASLCG IGVCVAVYGE SEVKPEVCPS 60 VPEVRTILSR FTTAPDVDRF KRVMNQEEFL QNRITMIQER MSKEDDETRE RDATVMLYEA 120 ATGKRPVADL NVGELTNLGL VIDERIKNLK EHIKRLGGEA PMEPSSLPTV PPYANVTGME 180 RNKRMKKIVL DRIANDATRR ATFKKRRRGL MKKASELSTL CDVEACLVVF GEGEVEPEAW 240 PSQEDARSVL DRFRALPETE QSKKMMNQED FLRQRIAKLQ DQVAKAVREN RERENKLLLH 300 DALAGKLGGY ESLTVEQLTS LDCAVNDKLR AVTARLAEMR AQNQVIPLPA LPAPPSMPMP 360 PPMPIQMTMM PPTSSLMTPV APLPYTNPVE LSPMGPPPGF EGIGQIHIQN QNQVQIQIQN 420 QNQNHEPDWL IDVARNGGDL GALVYSGYTG GNSNGASASN SNGASTSSGA GAGWPDMPDI 480 YNPGMLGGYC PWDDSAGPSF PPM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G11010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645781.1 | 5e-99 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D9UZV4 | 0.0 | A0A0D9UZV4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G11010.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 7e-26 | AGAMOUS-like 36 |