PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G05270.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

WRKY

Protein Properties

Length: 188aa MW: 20378.4 Da PI: 9.0284

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G05270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.2e-29	105	163	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++d ++v++tY g Hnh LPERR01G05270.1 105 LDDGYKWRKYGKKAVKSSPNPRNYYRCSAPGCGVKKRVERDRHDRRYVVTTYDGVHNHA 163 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-31	92	163	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-26	97	163	IPR003657	WRKY domain
PROSITE profile	PS50811	30.377	100	165	IPR003657	WRKY domain
SMART	SM00774	8.8E-32	105	164	IPR003657	WRKY domain
Pfam	PF03106	1.7E-22	106	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MAASLGLCHD TSSYAYSSLY GFPPLMADDV AAVDYNRSSF FPAAESSYCS HHHHHQLPVV 60 LAGGGGNSNE YYYSVSSSSS SSTAATAAAA SSRIGFRTRS EVEVLDDGYK WRKYGKKAVK 120 SSPNPRNYYR CSAPGCGVKK RVERDRHDRR YVVTTYDGVH NHAANAPTPP WSIVRPAAAA 180 AHSSESSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	95	162	7	74	Probable WRKY transcription factor 4
2lex_A	1e-26	95	162	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G05270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109578	6e-74	AK109578.1 Oryza sativa Japonica Group cDNA clone:002-135-F06, full insert sequence.
GenBank	AP002486	6e-74	AP002486.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F03.
GenBank	AP014957	6e-74	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	AY341854	6e-74	AY341854.1 Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
GenBank	CT831287	6e-74	CT831287.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI020N10, full insert sequence.
GenBank	HQ858826	6e-74	HQ858826.1 Oryza sativa Japonica Group isolate UT1324 WRKY transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633261.1	4e-49	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	4e-35	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A0D9UXN6	1e-134	A0A0D9UXN6_9ORYZ; Uncharacterized protein
STRING	LPERR01G05270.1	1e-135	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-36	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]