PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g23090.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 405aa    MW: 43811.6 Da    PI: 6.5149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g23090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.5e-2091332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         GfrF+P++ee++++yL + ++g++ + +e  i+++d+y + eP+dL  k    +++ + + +fF+  ++ +    + +r++  g+W ++ +
  LOC_Os12g23090.1   9 KLGFRFNPSQEEVITYYLPRLIAGHPPKDTEGyIHRADVYGAdEPRDLAgKyapVARSPNGDRFFFTGCKRVKG---KFSRSAGGGTWVSQSS 98 
                       67************************6655555*******9869****843443333334478***99998764...7999999*****8866 PP

               NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k++++++g ++g  k + f     + g++tdW+m+ey+l
  LOC_Os12g23090.1  99 -KDLKNREGIKIGEVKNFRFK----KGGNNTDWLMEEYHL 133
                       .888888*************8....567789*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-238152IPR003441NAC domain
PROSITE profilePS5100524.628152IPR003441NAC domain
PfamPF023651.4E-1411133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASLDLLLKL GFRFNPSQEE VITYYLPRLI AGHPPKDTEG YIHRADVYGA DEPRDLAGKY  60
APVARSPNGD RFFFTGCKRV KGKFSRSAGG GTWVSQSSKD LKNREGIKIG EVKNFRFKKG  120
GNNTDWLMEE YHLCGKEAGG VVEPVVCRIY VSPRAAPDSV AHQESAALPP PQELVPPPQE  180
LAPPPYPAAQ AAPQAPAPPR QVPVITQQQA PPQKRPAAPV AEPPCATKKM KGAVSAKPMA  240
PQSSVTASAA PPRCAVAPSQ HHPPFQTYPT DPFEPPAPAA SVTQPSVPAT PEQGPAYVPD  300
PADIGMEMDE LMSFLDSIPV DGILPSQLYE YDELAKELED ALQGGGEEDG NDNPPRRRGR  360
GGCDKQSQGG YRVLLKDMGD DQIDQQWLKV SLKDYHHLMK SCKL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QSS6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g23090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g23090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317850.0AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619212.10.0vegetative cell wall protein gp1
TrEMBLQ2QSS60.0Q2QSS6_ORYSJ; No apical meristem protein
STRINGORGLA12G0092700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.11e-13NAC domain containing protein 77
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]