PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g06180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 473aa MW: 52312.6 Da PI: 4.537 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 183 | 2.2e-56 | 48 | 391 | 2 | 354 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 +lLl+ Aeav++gd la+ + +rl + + +++++ Rla +f ++L++r+++ ++++y+ p++ + s ++ ++++ +e+sP LOC_Os11g06180.1 48 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSP 133 679***********************998554333334479******************9899984...55554....456778899****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++kf+h+t+NqaIl+a+ g+ vH++D++i++G+QW +L+ La g s+R+T++ + ++ + ++ + L++fA++l++pf++n + LOC_Os11g06180.1 134 FVKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLAR--CGGKSFRLTAITTYADCHASTHDTVVRLLSEFADSLELPFQYNSIC 224 ********************************************7..4668*********887799999999999****************87 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalf 268 +++ ++l +++ + + +++V++ ++ s+s+ + + +L +vk+l+Pk+vv +e++ ++ +s+sF+e f+eal++++++f LOC_Os11g06180.1 225 VHNEDEL--HAFFEDCKGSVIVSCDTTSMYYK--SLSTLQ--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEALHHFTTVF 311 7765555..777777799******99777775..554444..69*******************6555443444666***************** PP GRAS 269 dsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +s+++ + s + vE ellg++i++ v + g+ r+e + +e l GF + +ls + +qa++l+ ++ + + v + LOC_Os11g06180.1 312 ESMASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFGVVFK 391 ***77776666578899*********************999888.....5555..5********************999.44555544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.455 | 21 | 392 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-54 | 48 | 391 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MVLDSNELHQ HDAPDVDVSI NCDDRIFGQE SVNLAAIQEE LLEEDSLSDL LLAGAEAVEA 60 GDSILASVAF SRLDDFLSGI PENGAASSFD RLAYHFDQGL RSRMSSASTG CYQPEPLPSG 120 NMLVHQIIQE LSPFVKFAHF TTNQAILDAI IGDMDVHVVD LNIGEGIQWS SLMSDLARCG 180 GKSFRLTAIT TYADCHASTH DTVVRLLSEF ADSLELPFQY NSICVHNEDE LHAFFEDCKG 240 SVIVSCDTTS MYYKSLSTLQ SLLLVCVKKL QPKLVVTIEE DLVRIGRGVS PSSASFVEFF 300 FEALHHFTTV FESMASCFIG SSYEPCLRLV EMELLGPRIQ DFVVKYGSVR VEANASEVLE 360 GFMACELSAC NIAQARMLVG LFNRVFGVVF KKISLLMVYY ISLGKNDLRE PNKVIWSSLA 420 AGCGSHGIVV LAFYAADKLL EFKPKGIETY IHPAVERAHF HKEDRMWQEY EN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-30 | 86 | 396 | 52 | 372 | Protein SCARECROW |
5b3h_D | 4e-30 | 86 | 396 | 52 | 372 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.93382 | 2e-79 | stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32970478 | 2e-79 | ||||
Expression Atlas | Q53PL9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g06180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g06180 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120534 | 0.0 | AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617104.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
TrEMBL | I1QXX4 | 0.0 | I1QXX4_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q53PL9 | 0.0 | Q53PL9_ORYSJ; GRAS family transcription factor containing protein | ||||
STRING | ORGLA11G0036600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7684 | 32 | 50 | Representative plant | OGRP8945 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 6e-29 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g06180.1 |
Publications ? help Back to Top | |||
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