PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os08g40900.2 | ||||||||
Common Name | ARF21, ARF7B, LOC4346065, OJ1003_A09.14, Os08g0520500, P0689E12.38 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 1056aa MW: 117658 Da PI: 6.9419 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.4e-22 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + LOC_Os08g40900.2 71 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--R 159 99*****************************954.4444.49************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 + +++l+++++r+ LOC_Os08g40900.2 160 DAKQQLLLGIRRA 172 5677789999997 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 197 | 280 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPrastseFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+++ LOC_Os08g40900.2 197 AAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNIQ 280 79**********************************9********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-42 | 61 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-40 | 64 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-18 | 70 | 160 | No hit | No description |
PROSITE profile | PS50863 | 11.646 | 71 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-20 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-20 | 71 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-33 | 197 | 280 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.2E-10 | 927 | 1022 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.775 | 937 | 1021 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.22E-7 | 949 | 1016 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1056 aa Download sequence Send to blast |
MRKDADAQIP SYPNLPSKLI CILHSVTMLA DPDTDEVYAR MTLQPVSNCD KETLLASELA 60 LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAERIFPRL DFSMQPPAQE LQARDLHDNV 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD AKQQLLLGIR RANRQPTNLS 180 SSVLSSDSMH IGILAAAAHA AANNSQFTIY YNPRASTSEF VIPFAKYQKA VYGNQLSLGM 240 RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKTSHWRNIQ VAWDEAAPTE RRTRVSLWEI 300 EPIIAPFFIY PSPLFTAKRP RLPGMTDDET EMDGLLKRAM PWVGEEICKK DLNIQNSVVP 360 GLNLAQWMNM QHSSSLPGTV VQPELLNSLS GKPVQNLAAA DLSRQISFHP QFLQQNNIQF 420 NTALVPQQNQ QTEQLAKVIP TPNQLGSVII PQKVVQDCNS EQRQHVVTQP VQGSQPNINI 480 PQPQLVVQAQ LQQPQVILQA QLQQPQVVVQ AQLQQTQPSV QSHTVLQGGL QQIQLLQQQQ 540 PHVQHQQIPQ QLHHQQQQTQ QLQPVQQVQQ SVQEHQQIKI QPVHVSMDAS MNTQVADHQM 600 KLQLLKALQP QQPLISEQQK MLLDLQQQVI NSQSAPQQCV QVTNQAISLH NSNTIQYPTQ 660 QKVQSHQVQD LTGNVIPNSK SDIATSMGAS SLHVAGGRQL LKTDDVPSTS TSPSTNSNPV 720 LLQSIPSSSK NQSLTTAGKT SQSSVVLGPT IEQDTKPYQN VKQTVMIPKT TEQRPATGQD 780 CINNNPQMDY LDTSSSATSV CLSQADGSLQ QNFPPSSFHQ HHLLKDTVPD SEFEVTDPRN 840 NLLFGVNIDG QLGLPLNADL LANDIGTDKY MDQLPGNGIS NFISSKDSQQ ELSSSMISHS 900 FGVADMAFNS IDSAINDTPF LNRNSRSAAG PAHQRMRTYT KVHKRGAVGR SIDINRYSGY 960 DELKHDVARM FGIEGQLGDQ NRVGWKLVYE DHEKDVLLVG DDPWEDFVKC VRCIRILSPQ 1020 EEMQMRLVGD FGDSFLPNQA CSSSDGGHPW RITGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-139 | 2 | 301 | 89 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.48218 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 19352046 | 0.0 | ||||
Expression Atlas | Q6YZW0 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os08g40900.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os08g40900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071297 | 0.0 | AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649755.1 | 0.0 | auxin response factor 21 | ||||
Swissprot | Q6YZW0 | 0.0 | ARFU_ORYSJ; Auxin response factor 21 | ||||
TrEMBL | A0A0D3H287 | 0.0 | A0A0D3H287_9ORYZ; Auxin response factor | ||||
TrEMBL | A0A0E0IEP3 | 0.0 | A0A0E0IEP3_ORYNI; Auxin response factor | ||||
STRING | ONIVA08G23730.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART08G20780.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-180 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os08g40900.2 |
Entrez Gene | 4346065 |
Publications ? help Back to Top | |||
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