PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g09740.1
Common NameOJ1715_A07.24, Os07g0195600, OsJ_23437, OSNPB_070195600, P0589E08.7
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 665aa    MW: 69835.8 Da    PI: 3.8664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g09740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM805e-2591391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk.... 88 
                       lppG++F+P+d+elv ++L ++++gk+l+l+ vi ++d + + Pw+L +  +++ +e +fF+ ++ k+ +g+r++r +   gyW+ +      
  LOC_Os07g09740.1   9 LPPGLKFEPKDDELVARFLLARIQGKPLPLHGVILDADPLCAPPWRLLAD-HGRGDEAFFFADARAKNGKGSRQKRtVEGGGYWQGQRMcvdg 100
                       79****************************99***************743.456789*******************555599**977654433 PP

               NAM  89 dkevlskkgel.vglkktLvfykgrapkgektdWvmheyrl 128
                       ++ v+  +g +  + k +L ++ ++ +kg ++ Wvmhey++
  LOC_Os07g09740.1 101 ERLVVPDGGLEiAWRKYVLSYF-ADGEKG-SSGWVMHEYAI 139
                       4445544554426666677777.566665.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-334158IPR003441NAC domain
PROSITE profilePS5100529.3379158IPR003441NAC domain
PfamPF023659.4E-1510138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MASAAGDGLP PGLKFEPKDD ELVARFLLAR IQGKPLPLHG VILDADPLCA PPWRLLADHG  60
RGDEAFFFAD ARAKNGKGSR QKRTVEGGGY WQGQRMCVDG ERLVVPDGGL EIAWRKYVLS  120
YFADGEKGSS GWVMHEYAIT TPADLASSTM RLYRIRFSGH GKKRKREPES QSAHHDDGRA  180
RCAPQIAMPE TALLEDSAPP PQPVLPPAAV VNSVSDGAVP PPAPVVNCDS DVTDEDELQS  240
FVPEFSARNL FVSLPQGSHE AEADVVGGAL PAQSMSSFAD VGGPENMDDQ SCSGVVFANL  300
SDLIVLPPVE ASGAAPAPSW ASSLDNQNDE APVFFEFPES MDDIIGCFDF ATMDDPSCTS  360
AISEEPFLPP AAMVNHDDGY ASDNADQGCS GAVPLPSAVV DLPNETDGAD QSCSGVVDDS  420
SMVFANIHPL DSPAEGGHEA EAGAGGGRAA PAPSWVSSLD NQNDEAPMFF ELPESLDDMV  480
SCFDFAAMDG QSCTSAVSET ALIEELVLPP AAMVNHHDDS VSDIADHGCS GAAPPPSAVV  540
DLPDDSDGAD QSCSGMVDDS LPGYYEAELK VPLEYAARNP VDSPSKGGHD HEAEVDASGG  600
AGSMMSSPDK EKEHSSSGVM DVEATGFGVP DSMDGLSCID FAETMDDLSC IDFTIDDELF  660
DLWS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZDP3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g09740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g09740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038480.0AP003848.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1715_A07.
GenBankAP0043790.0AP004379.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0589E08.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.11e-107uncharacterized protein LOC107275325
TrEMBLQ6ZDP30.0Q6ZDP3_ORYSJ; Os07g0195600 protein
STRINGORUFI07G06210.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Representative plantOGRP9888212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.17e-15NAC domain containing protein 83