PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os07g02060.1 | ||||||||
Common Name | LOC4342232, OJ1123_C12.118, Os07g0111400, OSNPB_070111400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 291aa MW: 30418.1 Da PI: 6.5049 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.2e-33 | 124 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ LOC_Os07g02060.1 124 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHSHH 181 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-34 | 108 | 182 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-29 | 115 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.079 | 118 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-39 | 123 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-27 | 124 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MAMAGAGDWP FAADEAYADS SAIFAELGWA NGLAVVDAVG ELLPPLDPPG ELATPPPPPL 60 DLPETPAGSS ADGAASSCST DDADGGKPAA ASTEAASKSL TPGKKRARQP RFAFMTKSEI 120 DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSDDPSVV ITTYEGQHSH 180 HTVTFPRAAA TAAGFSHIHA MAALAAAPFS AHQQLYSNLQ PPPPTMPLAA TTPASSSSLL 240 QLPLHCNHEL QVVASCGGYP SSSSSPPASV LPVDKGLLDD MVPRAMRHDG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 113 | 180 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 113 | 180 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.38985 | 0.0 | callus| leaf | ||||
Os.42490 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519203 | 0.0 | ||||
Expression Atlas | Q8H5U1 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os07g02060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os07g02060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240958 | 0.0 | AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence. | |||
GenBank | AY341858 | 0.0 | AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645717.1 | 0.0 | probable WRKY transcription factor 57 | ||||
TrEMBL | Q8H5U1 | 0.0 | Q8H5U1_ORYSJ; Os07g0111400 protein | ||||
STRING | OS07T0111400-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-53 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os07g02060.1 |
Entrez Gene | 4342232 |