PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os06g39090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 1191aa MW: 136208 Da PI: 6.5243 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.4 | 8.7e-17 | 45 | 123 | 1 | 79 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevt 79 kfY +YAk GFsvrk++ k++ +gei++r+fvCs+eg+re ++ + t+++r++ra t +gC akl++++++ +g+ +v+ LOC_Os06g39090.1 45 KFYVDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTDRKREPRALTCCGCLAKLEIERNEeKGVHRVM 123 6****************99887..9*****************999876889999*****************9977777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-16 | 45 | 123 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.0E-21 | 171 | 254 | IPR018289 | MULE transposase domain |
Pfam | PF10536 | 1.5E-11 | 528 | 758 | IPR019557 | Aminotransferase-like, plant mobile domain |
SuperFamily | SSF54001 | 1.81E-20 | 949 | 1083 | No hit | No description |
PROSITE profile | PS50600 | 11.086 | 978 | 1190 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Pfam | PF02902 | 2.2E-5 | 993 | 1084 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Gene3D | G3DSA:3.30.310.130 | 1.4E-7 | 1043 | 1083 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016926 | Biological Process | protein desumoylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0004175 | Molecular Function | endopeptidase activity | ||||
GO:0016929 | Molecular Function | SUMO-specific protease activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1191 aa Download sequence Send to blast |
MDKVKGHGKN VRSDIMSSSY VSLEDQEEYK IMGTVVFSSE EEGYKFYVDY AKGKGFSVRK 60 NNLKRKDGEI IWRQFVCSCE GYRELKHFER TDRKREPRAL TCCGCLAKLE IERNEEKGVH 120 RVMSDSKKAQ AVELRMSGLR AFQIMEVMEN NYDELDEVGF VRKDLYNFFT RTYRVNKYNL 180 PFIPFIGVNH HRSTTIFGCG ILSNESVNSY CWLLETFLEA MRQVHPKSLI SDGDLAMAKA 240 ISKSMDEEEF ERRWADFKEN GGTGNGQWIA LIDVPTKGEV GSCLYRWEIL VGIDADPLEK 300 DAVRIYTAVV FKKVRAQIRL IAGLEVISGT NQDGSSLYVF GLKDDNEVWD EVRVTFRGQS 360 LEEVSTLKRK GIIRFWQQRK DFKEISKDEY FAKNNEFATW SKEEKGKFFS DLSLESARDL 420 FEKFVKTWNK GKLPSQYYEG ITRGPRWVLQ IAGEEASMKD RFVSPHRQTA NRSHAIKNTV 480 GHHDCEHAEI QPSTGTLVCS PHAMSEVILH LSPPQKKAIE VSGLGNLLKI NKIHIYRDLC 540 NEIARSYDKE KKAFNINGTF VTMTLDDVDC LLGLPSKGDE IFEAPKINKP ELFNLYKKEG 600 QTTITLEALR VAIINSSSYD DHFIRRFILF SIGSFICLTT QRYVRSGYLN LVDDVDKMRE 660 LNWSSLTLNQ LLKGILKFRE KETNIEGNVC LLQIWYWEKL RIDKLAVTIY HSGRERQLIQ 720 YWDKIKEKKR LFYLFGKGQV VDDIRGTIDC KEIPNENAHD NDSETRTNED FVCTSEEVHS 780 IISTEQSADI TLQERIQESI QTLQDNFNDF TKDFWPRMRA LILDCMENDS KCPERKDTTH 840 VFEDVEQEQI DPREHVSNHN EEYYINQNEN MTCETKDNSN QSNQSRKRLT GPTGRTYKPT 900 NRTDFIYETR GKKKDIIRTQ AQTKKTIVYI EKEDLTQQII DNGPPKNALR ELTKKEDPFI 960 TYINNTEDNK VMVHIEQVEV KWIRMKVLTQ PEFLNDDVMD AYIQCLRYKV KGIRGDGKAF 1020 LEMAIKISLL NVEGVHVEAS KPRNKRWIRD MARGYLAFDM IFLPINIKDT HWYLAVINAK 1080 RREVDGDSGG VKGAAVHGEE NVAAVAGGSD AVKRPHREPA EAGGGAATRR DSLEKGAGEE 1140 DGDGGGSQAG AETPPEEKAA RATSNGLRRR EAADSGGGGE ADVDGEVLAG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53436 | 0.0 | callus| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982630 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os06g39090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os06g39090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003617 | 0.0 | AP003617.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0502H06. | |||
GenBank | AP003622 | 0.0 | AP003622.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0633E08. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q655Z1 | 0.0 | Q655Z1_ORYSJ; Epstein-Barr virus EBNA-1-like | ||||
STRING | ORUFI06G21100.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 6e-16 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os06g39090.1 |