PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g10670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 49684.7 Da PI: 8.8054 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.2e-08 | 184 | 204 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg LOC_Os05g10670.1 184 ACPDFRK-GGCKRGDACEFAHG 204 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0013 | 179 | 205 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.159 | 180 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 184 | 206 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-7 | 184 | 204 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 214 | 238 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 214 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MVRKRRDTAR VNPTAVSGGG LSGLYSRASS SPPLHHSGSR RRLRTNTLPR RSWRRGEELE 60 SKMMMMGEGA HAPPWQQHVA SPVSGVEGGG GRESEVVAAP YHLLDTLRHY LPSNEAAAAE 120 DEEEAAAVAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRRYCY 180 SGTACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL 240 RVLPPSQQQG SNSPRGCGGG GAGAAASPLA ESYDGSPLRR QAFESYLTKS IMSSSPTSTL 300 VSPPRSPPSE SPPLSPDAAG ALRRGAWAGV GSPVNDVHVS LRQLRLGSPR SAPSCASFLP 360 AGYQYGSPKS PAAAAAAALY SLPSTPTRLS PVTVTTASGA TVTVEPLDLG LIEEEQPMER 420 VESGRALREK VFERLSKEAT VSTDAAAAAA GVAPDVGWVS DLIN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.31975 | 0.0 | callus| flower| leaf| panicle| root| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991601 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g10670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g10670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC132486 | 0.0 | AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640763.1 | 0.0 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 0.0 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0E0PIL5 | 0.0 | A0A0E0PIL5_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI05G06580.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 | Representative plant | OGRP1170 | 16 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-81 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g10670.1 |
Publications ? help Back to Top | |||
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