PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g59470.1 | ||||||||
Common Name | Os04g0691300, OSNPB_040691300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 31658.5 Da PI: 6.3361 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.1 | 5.3e-47 | 9 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya....tgkrknratksgyWkatgk 88 +pGfrFhPt+eelv +yL++kv g++ + +i+evd++++ePwdL +++++++ +yfFs +d+ky+ tg+r+nrat++g+Wkatg+ LOC_Os04g59470.1 9 APGFRFHPTEEELVGYYLARKVVGQQDDG--IIQEVDLNSIEPWDLL-QAQQHDQeyYCYFFSYKDRKYPsargTGTRTNRATAAGFWKATGR 98 79************************666..8**************7.34444441366**********98888899**************** PP NAM 89 dkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128 dk+vls+ + +g++ktLvfy+grap+g ktdW++heyrl LOC_Os04g59470.1 99 DKPVLSSsrS--SsspavIGMRKTLVFYRGRAPNGCKTDWIIHEYRL 143 ******8551..245556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-49 | 5 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.068 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-25 | 10 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEEEWCCVAP GFRFHPTEEE LVGYYLARKV VGQQDDGIIQ EVDLNSIEPW DLLQAQQHDQ 60 EYYCYFFSYK DRKYPSARGT GTRTNRATAA GFWKATGRDK PVLSSSRSSS SPAVIGMRKT 120 LVFYRGRAPN GCKTDWIIHE YRLVAHHQQP DGSCWVVCRA FHKPTTTTLQ HQLHLHRPAP 180 LLHHPGYYDD QYLYPPPAAA AGGGGLLCSP ALDMELEDEE DESKMMILSN DNIPLVVSPT 240 AVHTQGTGGD IINDATTAPA AAAAADHRRH LAPPPPLHLL ANSVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-38 | 8 | 163 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0WGZ5 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Present in developing xylems (PubMed:16103214, PubMed:17565617). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g59470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g59470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606656 | 0.0 | AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635310.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | Q9FH59 | 9e-60 | NC105_ARATH; NAC domain-containing protein 105 | ||||
TrEMBL | A0A0P0WGZ5 | 0.0 | A0A0P0WGZ5_ORYSJ; Os04g0691300 protein (Fragment) | ||||
STRING | OS04T0691300-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19027 | 9 | 9 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66300.1 | 2e-48 | NAC domain containing protein 105 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g59470.1 |
Publications ? help Back to Top | |||
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