PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g40060.1
Common NameLOC4336155, Os04g0476500, OSJNBa0022H21.20, OSNPB_040476500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 804aa    MW: 91884 Da    PI: 9.1857
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g40060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2154139190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  LOC_Os04g40060.1  54 RFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTtENQWEVVFVELEHNHPCN 139
                       5****************99988..9999**************99887...8999******************9***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1954139IPR004330FAR1 DNA binding domain
PfamPF105516.2E-25264357IPR018289MULE transposase domain
PfamPF044341.2E-6533577IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.742545581IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MDTHHSDQYA KSSLQLQFRD TSVSFENNNS VLDKHDITSP QVGMTFETAD LAYRFYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNT  120
TENQWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVKK TFSQSNYSIE AAGKAGKLRF AEGDVEALLV FFDKMQAQNS NFFYNWDMDD  240
EGRLKNVCWV DARSRAAYQH FCDVVCFDTV YLTYQFVIPL VAFLGINHHG QFVLLGCGLL  300
GDESPETFSW LFKKWLKCMN DKSPEAIITT HSRPVVKAVA EVFPNTRHRY NLWHIMKELP  360
EMSGRVEDKE AISLRMKKVV FDTITSTDFE REWVEMVNQY NLHDNHWLTT LFEERAKWVP  420
AYVKDTFWAG ISTVRRSERL EAFFDGYITP ETTIKTFIEQ FDTAMKLRSD REAYDDFRSF  480
QQRPQVLSGL LFEEQFANVY TINMFQKFQD HLKQLMNVTC TEVSRNGSIV TYTVTVIGKE  540
RKYDYKVMYN SAEKEVWCIC RSFQFKGILC SHALAVLRQE LVMLIPYKYI LDRWRKDYKC  600
PEESKETPIS PKAIKATGKG TKPENAREDK VDNLYKHGHQ YFADIVEMGA TDPDAMEYVL  660
SVMKEAKEKV RKFEESRKDR RPGDSPVSTG KRNGKSSRPS NEDGGNGISD STPATTTVAT  720
VAVATSTTMQ ATPTMVAIAP TSATVPAGMF LVPMHPHPMV FPPFTPAVPP VVAPAVPPPA  780
PAANVGDVAS NSTRKRKKRK GNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1793797RKRKK
2793799RKRKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61930.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329866870.0
Expression AtlasQ7XKT7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g40060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g40060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634987.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015634988.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015634989.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLQ7XKT70.0Q7XKT7_ORYSJ; OSJNBa0022H21.20 protein
STRINGOS04T0476500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1623233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-118FAR1-related sequence 6