PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g19375.1 | ||||||||
Common Name | LOC4332602, Os03g0306700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 174aa MW: 18991.7 Da PI: 6.5345 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.7e-11 | 23 | 82 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e + rk +NR++A+rsR +K+++++ L+ ++++L eN+a++ + + + +++e LOC_Os03g19375.1 23 EERQRNRKRSNRLSAQRSRIKKQQYVDGLAVEAEQLRRENDAMRAGAGAVLQRCRLVEQE 82 445556888***********************************9887777777666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-10 | 20 | 67 | No hit | No description |
SMART | SM00338 | 5.2E-11 | 20 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.5E-8 | 22 | 71 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.611 | 23 | 66 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.73E-8 | 25 | 75 | No hit | No description |
CDD | cd14702 | 7.71E-14 | 26 | 77 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 29 | 43 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MSVAPATEGS ARRSAAAAAA EEEERQRNRK RSNRLSAQRS RIKKQQYVDG LAVEAEQLRR 60 ENDAMRAGAG AVLQRCRLVE QENRVLAAHA RELCSALQLR ASQLRLLGEV AGVPLDVPDV 120 ADHLVQLYGG DLGMTPLSPP PLLPPLPPQI EMLYFQPDSV MDPVSMLQGY ENI* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.56365 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32995138 | 0.0 | ||||
Expression Atlas | Q10MJ6 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g19375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g19375 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC134769 | 0.0 | AC134769.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence. | |||
GenBank | AK109929 | 0.0 | AK109929.1 Oryza sativa Japonica Group cDNA clone:002-151-H09, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631799.1 | 1e-121 | ocs element-binding factor 1 | ||||
TrEMBL | Q10MJ6 | 1e-119 | Q10MJ6_ORYSJ; BZIP transcription factor family protein, expressed | ||||
STRING | ORUFI03G15220.1 | 1e-119 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12504 | 28 | 37 | Representative plant | OGRP11972 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75390.1 | 9e-07 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g19375.1 |
Entrez Gene | 4332602 |