PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g43170.1 | ||||||||
Common Name | LOC4330144, Os02g0646200, OSNPB_020646200, P0030D07.27, P0519A12.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 270aa MW: 28235.4 Da PI: 5.3139 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.9 | 3.2e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + + ++ fC ++ lC+ C H+ H+ LOC_Os02g43170.1 4 QCDVCAAEAASVFCCADEAALCDACDHRVHRAnklagkHR 43 7*****************************7677777776 PP | |||||||
2 | zf-B_box | 23.9 | 8.4e-08 | 62 | 94 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 ++ C+ ++ek+ lfC++++ lC++C + H LOC_Os02g43170.1 62 APLCDICQEKRGFLFCKEDRAILCRECDVPVHT 94 689*************************99884 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.5E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.43E-6 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.684 | 60 | 107 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.1E-11 | 60 | 107 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-6 | 62 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.17E-7 | 63 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAD EAALCDACDH RVHRANKLAG KHRRFSLLNP SASGRSPTST 60 TAPLCDICQE KRGFLFCKED RAILCRECDV PVHTASELTM RHSRYLLTGV RLSSEPAASP 120 APPSEEENSS SFCCSADDAV PAPAAPATSH GGSSGSSSIS EYLTTLPGWH VEDFLVDDAT 180 AEAAAAAAAT SSGISANGPC QGVTRIGGLQ ESAGYPAWMA QQQLCCDGLV AGDASPASRE 240 RWVPQMYADQ LAAGSKRSRT STASSYSYW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53236 | 0.0 | callus| flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6H630 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g43170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g43170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071507 | 0.0 | AK071507.1 Oryza sativa Japonica Group cDNA clone:J023090D24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623928.1 | 0.0 | B-box zinc finger protein 20 | ||||
Swissprot | Q9LQZ7 | 4e-52 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | Q6H630 | 0.0 | Q6H630_ORYSJ; ORPHANS transcription factor | ||||
STRING | OS02T0646200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 6e-37 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g43170.1 |
Entrez Gene | 4330144 |