PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g34680.1 | ||||||||
Common Name | LOC4329635, Os02g0551900, OsJ_07105, OSNPB_020551900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 38874.4 Da PI: 7.9463 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 66 | 88 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H +H LOC_Os02g34680.1 66 CSyeGCGKTFVDAGALRKHAHVH 88 77779**************9887 PP | |||||||
2 | zf-C2H2 | 15.5 | 5e-05 | 93 | 117 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+k F ++s LkrH H LOC_Os02g34680.1 93 YVCHyaGCDKKFLDSSKLKRHFLIH 117 9********************8877 PP | |||||||
3 | zf-C2H2 | 21.9 | 4.7e-07 | 123 | 147 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nLk H++tH LOC_Os02g34680.1 123 FVCPheGCGKAFSLDFNLKAHMKTH 147 89**********************9 PP | |||||||
4 | zf-C2H2 | 13.4 | 0.00023 | 153 | 178 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C ++F++ s L+ Hi+ H LOC_Os02g34680.1 153 HVCKypECARRFTQESKLRAHIKQqH 178 789999****************9877 PP | |||||||
5 | zf-C2H2 | 12.1 | 0.00061 | 221 | 246 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H LOC_Os02g34680.1 221 YVCPydGCAKAYIHEYKLNLHLKKeH 246 99*********************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-14 | 59 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.928 | 64 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0021 | 64 | 88 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.08E-6 | 65 | 89 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-13 | 91 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.152 | 93 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0032 | 93 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.71E-14 | 104 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-20 | 114 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.884 | 123 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3E-4 | 123 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 152 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.118 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.049 | 153 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 155 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-8 | 213 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.64E-5 | 215 | 244 | No hit | No description |
PROSITE profile | PS50157 | 8.85 | 221 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 221 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 223 | 246 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MMQTAGRRRH RWVKEWVPQD LVVAGGPCAL YKWVREDRLS ALKSRDKEQE AELAKPEPTT 60 EVLFLCSYEG CGKTFVDAGA LRKHAHVHGE RQYVCHYAGC DKKFLDSSKL KRHFLIHTGE 120 KNFVCPHEGC GKAFSLDFNL KAHMKTHSVD NYHVCKYPEC ARRFTQESKL RAHIKQQHEK 180 GGLQNPGGSA TNRSGLADHS HNSHTPKPSA APPTPSADRP YVCPYDGCAK AYIHEYKLNL 240 HLKKEHPNHY QDAGAQAASS KMSKRRSKPS LTAKMPLPKV PKRRGYTEPY QPPVSVVEEH 300 QWPRNVLYED DSEETEEEGD NVGDGARYRA ASSDDDEETE DEE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 3e-33 | 66 | 174 | 8 | 114 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 277 | 283 | PKVPKRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.88427 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32988969 | 0.0 | ||||
Expression Atlas | Q0E0H1 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g34680.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g34680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK103760 | 0.0 | AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627689.1 | 0.0 | zinc finger transcription factor YY1 isoform X1 | ||||
Swissprot | Q2V3L3 | 1e-100 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A0E0NGA5 | 0.0 | A0A0E0NGA5_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0E0H1 | 0.0 | Q0E0H1_ORYSJ; Os02g0551900 protein | ||||
STRING | ORUFI02G21320.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0551900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2094 | 38 | 99 | Representative plant | OGRP3856 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G06634.1 | 8e-98 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g34680.1 |
Entrez Gene | 4329635 |
Publications ? help Back to Top | |||
---|---|---|---|
|