PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g67410.1 | ||||||||
Common Name | LOC4325035, Os01g0899800, OSNPB_010899800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | AP2 | ||||||||
Protein Properties | Length: 696aa MW: 71840.4 Da PI: 7.0671 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 6e-14 | 282 | 341 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ +++ +g ++ +e+Aa+a++ a++k++g LOC_Os01g67410.1 282 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVLIGGYDKEEKAARAYDLAALKYWG 341 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 46.7 | 7.9e-15 | 384 | 435 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g LOC_Os01g67410.1 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 435 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-11 | 282 | 341 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.34E-18 | 282 | 351 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-16 | 282 | 351 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-14 | 283 | 350 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.321 | 283 | 349 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-26 | 283 | 355 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 284 | 295 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-10 | 384 | 435 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.36E-23 | 384 | 445 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-17 | 384 | 445 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.045 | 385 | 443 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-18 | 385 | 444 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 385 | 449 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 425 | 445 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MATMNNWLAF SLSPQDQLPP SQTNSTLISA AATTTTAGDS STGDVCFNIP QDWSMRGSEL 60 SALVAEPKLE DFLGGISFSE QQHHHGGKGG VIPSSAAACY ASSGSSVGYL YPPPSSSSLQ 120 FADSVMVATS SPVVAHDGVS GGGMVSAAAA AAASGNGGIG LSMIKNWLRS QPAPQPAQAL 180 SLSMNMAGTT TAQGGGAMAL LAGAGERGRT TPASESLSTS AHGATTATMA GGRKEINEEG 240 SGSAGAVVAV GSESGGSGAV VEAGAAAAAA RKSVDTFGQR TSIYRGVTRH RWTGRYEAHL 300 WDNSCRREGQ TRKGRQVLIG GYDKEEKAAR AYDLAALKYW GPTTTTNFPV NNYEKELEEM 360 KHMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE 420 EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILDSAALPV GTAAKRLKDA EAAAAYDVGR 480 IASHLGGDGA YAAHYGHHHH SAAAAWPTIA FQAAAAPPPH AAGLYHPYAQ PLRGWCKQEQ 540 DHAVIAAAHS LQDLHHLNLG AAAAAHDFFS QAMQQQHGLG SIDNASLEHS TGSNSVVYNG 600 DNGGGGGGYI MAPMSAVSAT ATAVASSHDH GGDGGKQVQM GYDSYLVGAD AYGGGGAGRM 660 PSWAMTPASA PAATSSSDMT GVCHGAQLFS VWNDT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.65151 | 0.0 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116013843 | 0.0 | ||||
Expression Atlas | A0A0P0VBN0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g67410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g67410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240892 | 0.0 | AK240892.1 Oryza sativa Japonica Group cDNA, clone: J065030K10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634444.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT1 | ||||
TrEMBL | A0A0P0VBN0 | 0.0 | A0A0P0VBN0_ORYSJ; Os01g0899800 protein | ||||
STRING | OS01T0899800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-118 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g67410.1 |
Entrez Gene | 4325035 |