PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g66590.3 | ||||||||
Common Name | AS2, B1099D03.43, CRLL3, LBD6, LOC4324906, Os01g0889400, OsJ_04355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 27621.9 Da PI: 8.0637 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.8 | 7.7e-43 | 38 | 136 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v++i+ lq++l+ql+++ LOC_Os01g66590.3 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQD 130 7******************************************************************************************** PP DUF260 94 lallke 99 la++k LOC_Os01g66590.3 131 LARAKF 136 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.332 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-42 | 38 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009799 | Biological Process | specification of symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005654 | Cellular Component | nucleoplasm |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ PDCVFAPYFP 60 PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVAIISIL 120 QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTNNG PHSMAEFIGN AVPNGAQSFI 180 NVGHSAALAS VGGAAACFGQ EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG 240 HMSGLGALGG APFLKSGIAG SDERQGAGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-53 | 34 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-53 | 34 | 141 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18459 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37989198 | 0.0 | ||||
Expression Atlas | Q8LQH4 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. | |||||
UniProt | Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00211 | DAP | Transfer from AT1G65620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g66590.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g66590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200237 | 0.0 | AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds. | |||
GenBank | AK071407 | 0.0 | AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence. | |||
GenBank | AK119575 | 0.0 | AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634701.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | A2WXT0 | 0.0 | LBD6_ORYSI; LOB domain-containing protein 6 | ||||
Swissprot | Q8LQH4 | 0.0 | LBD6_ORYSJ; LOB domain-containing protein 6 | ||||
TrEMBL | A0A0E0N626 | 0.0 | A0A0E0N626_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G43320.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 4e-54 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g66590.3 |
Entrez Gene | 4324906 |
Publications ? help Back to Top | |||
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