PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g46800.1 | ||||||||
Common Name | LOC4324183, OSJNBa0049H05.39, P0694A04.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 29056.4 Da PI: 7.4157 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 84.5 | 1e-26 | 100 | 161 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+Y+rCt++ gC++ k+v+r++ dp +++++Y+g+H++ LOC_Os01g46800.1 100 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGDHTCA 161 59***************************98999*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.0E-28 | 87 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-25 | 93 | 161 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.643 | 95 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-38 | 100 | 162 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 101 | 160 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAAGADERCR ALVSGLLSSI DRSISIARSC CTEAAAAGRL TQQAGAAPES PPSADGSAGS 60 DLGADSRCRA NAAGPCKKRK TLPKWSKQVK VRSVQDVGPL DDGFSWRKYG QKDILGAKYP 120 RAYFRCTHRH TQGCHASKQV QRADGDPLLF DVVYHGDHTC AHGVRSAAAA IDGQAAASAE 180 QKHQPTPPQE QNAVSVAFTS MAVVNASTSS PFVSPAMSDC QISYELGGGS MAGVRNVPDV 240 ELASKTNSSM GDDMEFMFSL DSDFLDTYKY SSYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-21 | 97 | 160 | 5 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 50843957 | 0.0 | ||||
Expression Atlas | Q94DC5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g46800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g46800 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676926 | 0.0 | AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632319.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | Q0JKQ9 | 0.0 | Q0JKQ9_ORYSJ; Os01g0656400 protein | ||||
TrEMBL | Q6B6R3 | 0.0 | Q6B6R3_ORYSI; Transcription factor WRKY98 | ||||
TrEMBL | Q94DC5 | 0.0 | Q94DC5_ORYSJ; Transcription factor WRKY08-like | ||||
STRING | ORUFI01G28020.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0656400-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 1e-41 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g46800.1 |
Entrez Gene | 4324183 |