PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g07880.1 | ||||||||
Common Name | OSJNBa0089K24.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 204aa MW: 21092 Da PI: 10.607 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.8 | 2e-12 | 109 | 169 | 2 | 62 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ LOC_Os01g07880.1 109 KEQNRLKRLLRNRVSAQQARERKKAYMTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 169 78899***************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.6E-13 | 108 | 172 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.5E-11 | 109 | 170 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.185 | 110 | 173 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.19E-12 | 113 | 170 | No hit | No description |
CDD | cd14704 | 7.03E-15 | 113 | 163 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-16 | 113 | 172 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 115 | 130 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAAQEQEQEK QQVKTSTTSS LPSSSERSSS SAPNNLKEGG GVESDEEIRR VPEMGGGGGS 60 ASSGAGADER QGKEDGKQQG GGGGGAAAAG GGQEQAPPAR KRGRSAGDKE QNRLKRLLRN 120 RVSAQQARER KKAYMTELEA KAKDLELRNA ELEQRVSTLQ NENNTLRQIL KNTTAHAGKR 180 GGGGGGKGGD GGGGGKKHHF TKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 184 | 192 | GGKGGDGGG |
2 | 186 | 195 | KGGDGGGGGK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5VR11 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g07880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g07880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003215 | 0.0 | AP003215.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0089K24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617496.1 | 1e-139 | transcription factor HY5 | ||||
Swissprot | Q9SM50 | 5e-46 | HY5_SOLLC; Transcription factor HY5 | ||||
TrEMBL | A0A0E0MS14 | 1e-138 | A0A0E0MS14_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0JQA4 | 1e-138 | Q0JQA4_ORYSJ; Os01g0174000 protein | ||||
TrEMBL | Q5VR11 | 1e-137 | Q5VR11_ORYSJ; Putative TGACG-motif binding factor | ||||
STRING | ORUFI01G05050.1 | 1e-138 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 | Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 1e-33 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g07880.1 |
Publications ? help Back to Top | |||
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