PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0026.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 220aa    MW: 25255 Da    PI: 6.8705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171864248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +W  eEd++l ++v ++G ++W+ Ia++ g++R++k+c++rw++yl
  Kaladp0096s0026.1.p 18 AAWKLEEDQKLEEYVLKHGAKRWNQIAEKTGLNRSGKSCRLRWLNYL 64
                         58*******************************************97 PP
2Myb_DNA-binding49.78.6e-1670114147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++++E++l+ +++k+lG++ W++Ia +++ gRt++++k++w+ +
  Kaladp0096s0026.1.p  70 RGNMSEDEEDLIQRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 114
                          899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.3671268IPR017930Myb domain
SMARTSM007173.5E-141666IPR001005SANT/Myb domain
SuperFamilySSF466892.49E-2817111IPR009057Homeodomain-like
PfamPF002497.8E-161864IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-231970IPR009057Homeodomain-like
CDDcd001677.78E-111964No hitNo description
SMARTSM007175.3E-1569117IPR001005SANT/Myb domain
PROSITE profilePS5129418.55369119IPR017930Myb domain
PfamPF002492.7E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2371118IPR009057Homeodomain-like
CDDcd001671.10E-972115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAAGKTRGSS YKEVTSRAAW KLEEDQKLEE YVLKHGAKRW NQIAEKTGLN RSGKSCRLRW  60
LNYLKPGIKR GNMSEDEEDL IQRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNFHLKTRVL  120
GETETNNIPS KHKTSRTSYY EKEPTTSGNN NHECHAGNPN ANQIDNECQA AGNLNANQIN  180
EADNCFDWSP HISDCSEWVN RLLDLDVEQW LQEDMDILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825024.12e-61PREDICTED: transcription factor MYB114-like
TrEMBLA0A2I4F0594e-60A0A2I4F059_JUGRE; transcription factor MYB114-like
STRINGXP_008364573.11e-59(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27920.14e-48myb domain protein 0