PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV58428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | WRKY | ||||||||
Protein Properties | Length: 307aa MW: 34471.4 Da PI: 7.0648 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 151 | 209 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++v+ tYegeHnh+ KZV58428.1 151 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSIEDQTIVVATYEGEHNHH 209 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-29 | 141 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.395 | 145 | 211 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-25 | 147 | 211 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-33 | 150 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 151 | 209 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MEFTSLVDTS LDLNIKPSRF LDEVPIWRQE AGNDFIELGR NLTASEERGA LIEELKRVSA 60 ENKKLTDMLT VVCENYTELR NQLMEHTTKI NPGPPKKRKA ESSINNNIGP SESSSSDEDS 120 SKKPREEEQN KTKISHTYTK TEASDTSLII KDGYQWRKYG QKVTRDNPCP RAYFKCSFAP 180 SCPVKKKVQR SIEDQTIVVA TYEGEHNHHP PLKAEASPGS NRNLTPAGTS PYSTSPHSSA 240 PTITLDLTPS EPAHEETRNS RRKNDGPQLQ HHHLVEQMVS TLTKDPNFIA ALAAASTRNF 300 ILQNEQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-18 | 149 | 211 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV58428.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082382.1 | 1e-130 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 5e-90 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2Z7DEV8 | 0.0 | A0A2Z7DEV8_9LAMI; Putative WRKY transcription factor 40 | ||||
STRING | EOY26052 | 1e-112 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-82 | WRKY DNA-binding protein 40 |