PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53326.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 716aa    MW: 79059.2 Da    PI: 9.8357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53326.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081771348
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmg.......kgRtlkqcksrwqkyl 48
                     rW t+E++ll+ av+++G g   W +Ia++++       + +t+ +c+ ++++++
       KZV53326.1 17 RWGTWEELLLAFAVNRHGAGagAWLSIASELQkrssdpnLALTAQNCRQKYLDLK 71
                     8**************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.5E-71771IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.920.108.7E-15325439IPR001487Bromodomain
SuperFamilySSF473705.23E-17326437IPR001487Bromodomain
SMARTSM002973.0E-13328437IPR001487Bromodomain
CDDcd043691.06E-5339432No hitNo description
PfamPF004398.8E-10346421IPR001487Bromodomain
PROSITE profilePS5001412.582347418IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MALPDNKQEP DGDDSFRWGT WEELLLAFAV NRHGAGAGAW LSIASELQKR SSDPNLALTA  60
QNCRQKYLDL KRRYVSQNDD ESVTTDKPND DETGASATTL LEELRKLRVA ELRREVQRYD  120
LNIESLELKM KSMEEEKERG SRRERNRPDL ERKSEENRSE GDVKLDEEPS SEPVAGADLL  180
AADELEKDHM SVNESNSTDL GAEKTRTGEK EIEPVEAEAT EAGRNRTGES SEEPAGLNSE  240
PNLKPDREDS CNGSSNSIEK ESGKAAIAER ASESGESEAE SKGGDEALKE SSDVQSSASR  300
SKKEEGIDKA RRGNTSGDER DHEDQSRSVK DLSAQSQPLI DFLQVIRSHK LGSVFERRLR  360
SQETPKYQKL VLQHVDLDTI EQRLKEGWYL GSSSKFFRDL LLLVNNALVF FSKNSSEARA  420
AFEFRKLIAK EMSKCTKSES SSKKQISLQS LSLTKKEDRE ASHSLLLKPR ISGSLIVCRK  480
RSSIAAKAAG SSSGADSKKK EQTASPAEEK DAKLQPSQPS ENAEEPKITK KRTRDRFSSV  540
AANSKKNGKS QSNNGGNKNP VAESGKNQGK GGSSSLHSEP RGETKRKNQA IVDSKKRGAA  600
NFLNRMKQSS SSNNGALLDA LKNTPLTSES TSSKGGSEQK KNENVRRSDK KEHQVATKRS  660
SETRQAKEKG SPAKRNVGRP PKTGTASRPN LGKRGRERDE TEASVSRQPK KRSKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53326.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078831.10.0DNA ligase 1 isoform X1
TrEMBLA0A2Z7D8B20.0A0A2Z7D8B2_9LAMI; DNA-binding bromodomain-containing protein
STRINGMigut.K00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-54DNA-binding bromodomain-containing protein