PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51849.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 511aa    MW: 57599.4 Da    PI: 6.4086
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51849.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.81.9e-084274651854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  KZV51849.1 427 MFQNflHPYPKDAEKHLLAIKSGLTRNQVSNWFINARVR 465
                 5887779******************************88 PP
2BELL71.51.4e-23298367272
        BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 + e+q+kk ++l+ll+++d++Y+++ ++++tv+s+F+av++l++ +++ ++Al +iS  +++L+++i+++i
  KZV51849.1 298 ESEVQAKKKHMLTLLQMIDEQYNRCLDEVHTVVSAFHAVTELDP-NLHSRFALPTISSMYKNLRERISGHI 367
                 5799****************************************.***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-16248365IPR006563POX domain
PfamPF075262.9E-20250364IPR006563POX domain
PROSITE profilePS5007111.11406469IPR001356Homeobox domain
SMARTSM003891.7E-5409473IPR001356Homeobox domain
CDDcd000861.77E-10409470No hitNo description
SuperFamilySSF466893.34E-15411477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-26412475IPR009057Homeodomain-like
PfamPF059201.6E-14426465IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MQNDASESHS VVTDVNSLNS ALATLGYSDS VYRLNHNRAM SGFPQPSSFV EAVNNLVRGQ  60
IANRDEISPF NIQDPNQVME GIPFPTLTPI TTLSSVRNGT LDNQEKLPNS CHCVYPFDDS  120
SNMVYSSLAT MNHGYESLPF DSGTKWELNK FVSPESFGRV IGKNSVQPLN PTENPFQDEW  180
MLSQNAAGTN SNSRGTSIFS NELSLSLASS QPSTLHGTSV QDQCSEQTSC SSNNLSLSFD  240
SYKPLQPSPL LGSRLFQAMQ EILAEIACYA LVNYSTAAVD NGNKVPVVSS HCIFPSDESE  300
VQAKKKHMLT LLQMIDEQYN RCLDEVHTVV SAFHAVTELD PNLHSRFALP TISSMYKNLR  360
ERISGHILAM GTNLNEGGDQ EKEDKSFETS FIQKQWALQQ LRKSDSQLWR PQRGLPERSV  420
SVLRAWMFQN FLHPYPKDAE KHLLAIKSGL TRNQVSNWFI NARVRLWKPM IEEMYAEVSR  480
RKTRRNGEDQ ADHGNFHRNQ MHFENRRFAM D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-14415473563Homeobox protein Meis2
3k2a_B4e-14415473563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51849.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550152.11e-176homeobox protein ATH1-like
SwissprotP487313e-95ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A2Z7D4Y80.0A0A2Z7D4Y8_9LAMI; Uncharacterized protein
STRINGSolyc08g065420.2.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82612327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-97homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]