PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44173.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family WRKY
Protein Properties Length: 307aa    MW: 34590.7 Da    PI: 9.0823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44173.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.46.9e-29156215159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs ed++vv+ tYeg+Hnh+
  KZV44173.1 156 VKDGYHWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQRSIEDKTVVVATYEGKHNHP 215
                 58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28147217IPR003657WRKY domain
PROSITE profilePS5081127.049151217IPR003657WRKY domain
SuperFamilySSF1182904.18E-25154217IPR003657WRKY domain
SMARTSM007741.7E-31156216IPR003657WRKY domain
PfamPF031063.1E-23157215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEFIRLLNTS LDLNLKPLRF LDETPEMKHE VESSLKLGAS SYVKQEKGAL IEELNRVSAE  60
NKKLTELLTV MCEDYNELQN RLKEYTNKYP ESDSISRKRT RESVINNINE AINNGSSVSS  120
SSDEDSCKKP REEEDTKGKT WRTFVRTEAS DASLIVKDGY HWRKYGQKVT RDNPSPRAYF  180
KCSYAPSCPV KKKVQRSIED KTVVVATYEG KHNHPQPPKL ETSSTPNGSS TPGNVPCSTS  240
LSSSRPTAML NLTSHDESTT RSTKSRDKDQ LRHSLLEHMA STLTRDPNFK AAVAAAISLQ  300
LNTRTQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-211552181375WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44173.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082382.11e-114probable WRKY transcription factor 40
TrEMBLA0A2Z7CBV80.0A0A2Z7CBV8_9LAMI; WRKY DNA-binding protein 40 isoform 1
STRINGcassava4.1_012109m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-77WRKY DNA-binding protein 40