PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44085.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family RAV
Protein Properties Length: 294aa    MW: 33898.4 Da    PI: 9.4491
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44085.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.61.7e-093480254
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                ++kGV    ++g W A+I+       +  r++lg+f ++ eAa a++ a+ kl+
  KZV44085.1 34 RFKGVV-PQQNGHWGAQIYA------NhHRIWLGTFKSEIEAAMAYDTAAIKLR 80
                578885.556899****999......44**********99************98 PP
2B388.94e-28151248190
                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f+k+ltpsdv+k++rlv+pk++a +h        ++++  +++l ++d++ r W+++++y+k+s+++v+t+GW++Fvk++ L+++D++ F++ +r ++
  KZV44085.1 151 FEKELTPSDVGKLNRLVIPKRYAVKHfpsvpdssEKDSWDEVQLEFYDRQMRLWKFRYCYWKSSQSFVFTRGWNRFVKDKCLRANDTISFYMYERGGG 248
                 99****************************9988667779999************************************************6665333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.7663489IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-163489IPR001471AP2/ERF domain
SMARTSM003801.0E-183495IPR001471AP2/ERF domain
CDDcd000183.18E-213491No hitNo description
SuperFamilySSF541712.22E-143490IPR016177DNA-binding domain
PfamPF008472.7E-43580IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-32146257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27148253IPR015300DNA-binding pseudobarrel domain
CDDcd100178.08E-24150249No hitNo description
PROSITE profilePS5086312.844151258IPR003340B3 DNA binding domain
PfamPF023626.3E-25151248IPR003340B3 DNA binding domain
SMARTSM010195.3E-20151257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MFSHVNLNKN EESSDSNCCN IYMSHPCKRS RVERFKGVVP QQNGHWGAQI YANHHRIWLG  60
TFKSEIEAAM AYDTAAIKLR SGDSHRNFPW TGLSVQEPKF QSHFSTDAVL NMIRDGSYRS  120
KFAEFLRTQK GELELGLNGD GDGQFSCTLL FEKELTPSDV GKLNRLVIPK RYAVKHFPSV  180
PDSSEKDSWD EVQLEFYDRQ MRLWKFRYCY WKSSQSFVFT RGWNRFVKDK CLRANDTISF  240
YMYERGGGHS FLVIDKAANK LGSSRLINKD TTFVGVMAST NMNKGIRLFG VQID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-3015024013100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-158AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P57e-94RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A2Z7CBN50.0A0A2Z7CBN5_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-115(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.18e-93RAV family protein