PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV42255.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 277aa    MW: 30918.8 Da    PI: 6.5228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV42255.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10200242855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ++RR+ri +++ +L+el+P+       K++ +++LekA+ Y+k Lq
  KZV42255.1 200 AAKNRRERISERLKTLQELVPNG-----SKVDMVTMLEKAISYVKFLQ 242
                 669*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14190254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-13192250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-12193246No hitNo description
SMARTSM003531.8E-12198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7201242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNYEQFFSGP SSSEKICHDE HRRAQIPGKA AENNFATNNF SSESSPTNEL GFQVQPAYYL  60
LAESGSMRDF KPEFCNVIGN GTLLNFEVDT NVMPANNSYA RMSKEDEYNG WVDFPKFFAT  120
DNILPETSSH HHAAVPLNDR ENVMDKGIQE LGRPETSKNK RPALVDGVRG LKKHCDVVSS  180
PMTKSTKSES TPRKDPLSIA AKNRRERISE RLKTLQELVP NGSKVDMVTM LEKAISYVKF  240
LQLQVKVLAT DEFWPSQGGK APELSQVKEA IDAILGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV42255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099478.12e-69putative transcription factor bHLH086
TrEMBLA0A2Z7C5P40.0A0A2Z7C5P4_9LAMI; Rhd six-like 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-49ROOT HAIR DEFECTIVE6