PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV35221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | AP2 | ||||||||
Protein Properties | Length: 403aa MW: 45454.3 Da PI: 7.0959 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 130 | 179 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+eAa+a+++a+ k++g KZV35221.1 130 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGGFDTAYEAARAYDRAAIKFRG 179 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.3 | 3.9e-13 | 222 | 272 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g KZV35221.1 222 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 272 79********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.90E-24 | 130 | 186 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-15 | 130 | 187 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-10 | 130 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-30 | 131 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.24 | 131 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 131 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 222 | 281 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.03E-23 | 222 | 282 | No hit | No description |
Pfam | PF00847 | 7.4E-9 | 222 | 272 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 223 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-30 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 223 | 280 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-6 | 262 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MFHGRNLLVE TVGTSPTAAT GGGGSTAPGG ASASGAPSSS SVVNLETSSN TAEEDSRWNH 60 ACCFDVWKSN AHEVEGKSGG YVTKEFFSAS SGVHVLHRPE NQRGPAEQSF VAQQRQLVRK 120 GRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQIYLGGF DTAYEAARAY DRAAIKFRGL 180 DADINFVAGD YVEDLNQMKN LTKEEFVHIL RRQSSGFSRG NSRYRGVTLH KCGRWEARMG 240 QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGKEAVTNFE PSTYRQEMNS ETDNRDGGEE 300 YDLDLNLGIS RPVTNRQTHN LHAGSFRLHL GSEKLPHDEA RVNVEIQIQS LLSDGIFPLD 360 LYLDYTHWIY HFLLQNFEHP FFWSEADSSF HPIYEVVNSP CWF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV35221.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077383.1 | 1e-122 | floral homeotic protein APETALA 2 | ||||
Swissprot | B8AMA9 | 2e-96 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | B8AXC3 | 4e-96 | AP21_ORYSI; APETALA2-like protein 1 | ||||
Swissprot | Q84TB5 | 2e-96 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | A0A2Z7BKV3 | 0.0 | A0A2Z7BKV3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009606014.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 6e-91 | related to AP2.7 |
Publications ? help Back to Top | |||
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