PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV18924.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 355aa    MW: 39571 Da    PI: 7.9549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV18924.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-073959526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C f+++ G C yG+rC++ H+
  KZV18924.1 39 ICTFYQK-GMCAYGSRCRYEHV 59
                7******.***********997 PP
2zf-CCCH19.91.3e-06142164326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+ fa+ G C++G++C+ +Hg
  KZV18924.1 142 QSICS-FAAAGACPRGNKCPHIHG 164
                 56899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.981633IPR000571Zinc finger, CCCH-type
SMARTSM003560.019732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6731IPR000571Zinc finger, CCCH-type
PfamPF156639.0E-81169No hitNo description
PROSITE profilePS5010314.4083461IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-43560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53758IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-43958IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.756139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.011140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.53E-13196272No hitNo description
Gene3DG3DSA:3.30.40.108.8E-10202267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.43E-4207267No hitNo description
PfamPF146344.2E-7207267IPR001841Zinc finger, RING-type
SMARTSM001841.8E-7208265IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297208266IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.079295323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723295324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MFSPFNFFRV QCKFFAHGAC LKGEHCEFSH DWKAAPNNIC TFYQKGMCAY GSRCRYEHVK  60
PSRSHSPVPS SAAELSFSVV QPSGTAGYDA CSSPALITER SAANGSSHTP SRLAWGEKVG  120
HQDLPESAVE ARSMKSVDPS DQSICSFAAA GACPRGNKCP HIHGDTCPTC AKQCLHPYRP  180
QEREEHMKTC EKMQKHLEAL RHSQEIECSV CLERVLSKPV AAERKFGILS ECDHPFCISC  240
IRNWRGSSPA SGLDINAALR ACPICRKLSY FVIPSVIWYS SKEEKLEIVD SYKKKLKSID  300
CKHFDFGNGT CPFGTSCFYK HAYRDGTLEE VVLRHLGDED GNTVIVKEIR FHLSN
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV18924.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087508.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-160C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2Z7AI550.0A0A2Z7AI55_9LAMI; Zinc finger CCCH domain-containing protein 69
STRINGVIT_13s0064g01090.t011e-177(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-152C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]