PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN542584.1_FGP001

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 575aa MW: 66932.3 Da PI: 6.9843

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN542584.1_FGP001	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.1	4.5e-11	144	186	2	41
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkr 41 f+n+YA+ vGFs+++++++k+ krngeit++t++C++ ++ KN542584.1_FGP001 144 FFNFYAYLVGFSIVITHHYKTtskKRNGEITRYTYQCYRVEFE 186 9*****************99999***********98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-9	144	187	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.767	344	380	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-5	355	382	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
GGPEKSIEEL YESKNIHFKR KRDDTNITNE GNDDPNIGEI EDLQLLNSGN EAKEIHNGEI 60 YDQSTKENQE TTYGQNVQDC GEQVTITSTN EASTSNANSS AEAISEEDID NFLENVEGNK 120 VQIDKKHIPD IGMEFRSDKE AHGFFNFYAY LVGFSIVITH HYKTTSKKRN GEITRYTYQC 180 YRVEFETLWP QMIEKHSLQN IKYLEIMWRT RENYIPVYFK YDFCPFIHST ALSEGTNARF 240 KRGVGPTHCV MTFLKEYDTI NDTIFDTEYC KDHVSRTKKP KKFWSSYSIE LQASELYNLG 300 IFKKFQDELR ETLNLEVAAI QHGKTYEVYA TENLTKKEFR QRRYVVLTDI SQENFVCICA 360 KFSKDGILCS HVLKVMLALK ISKIPDKYKI EKWRKKERKC TARIENTATN ENSSVLRFNV 420 LSRRMADMAS KASKRKDTYL YMLDQMDKLD GNLDLLLEEG DQNLPHDGNS TIEEAIGQQA 480 NQETLNEEEE EEEIEDPDLA NTKGKKSART KGIVEKLKEG LLKQRRNQNG NRQQVPQAKG 540 RSKLVKIRRI QQIRRLKRGD EDEWKKSINM KKEKN

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

GGPEKSIEEL YESKNIHFKR KRDDTNITNE GNDDPNIGEI EDLQLLNSGN EAKEIHNGEI  60
YDQSTKENQE TTYGQNVQDC GEQVTITSTN EASTSNANSS AEAISEEDID NFLENVEGNK  120
VQIDKKHIPD IGMEFRSDKE AHGFFNFYAY LVGFSIVITH HYKTTSKKRN GEITRYTYQC  180
YRVEFETLWP QMIEKHSLQN IKYLEIMWRT RENYIPVYFK YDFCPFIHST ALSEGTNARF  240
KRGVGPTHCV MTFLKEYDTI NDTIFDTEYC KDHVSRTKKP KKFWSSYSIE LQASELYNLG  300
IFKKFQDELR ETLNLEVAAI QHGKTYEVYA TENLTKKEFR QRRYVVLTDI SQENFVCICA  360
KFSKDGILCS HVLKVMLALK ISKIPDKYKI EKWRKKERKC TARIENTATN ENSSVLRFNV  420
LSRRMADMAS KASKRKDTYL YMLDQMDKLD GNLDLLLEEG DQNLPHDGNS TIEEAIGQQA  480
NQETLNEEEE EEEIEDPDLA NTKGKKSART KGIVEKLKEG LLKQRRNQNG NRQQVPQAKG  540
RSKLVKIRRI QQIRRLKRGD EDEWKKSINM KKEKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN542584.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012618	0.0	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881725.1	1e-164	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q01HN2	1e-161	Q01HN2_ORYSA; OSIGBa0115K01-H0319F09.20 protein
TrEMBL	Q5JMV5	1e-160	Q5JMV5_ORYSJ; Far-red impaired response-like
TrEMBL	Q7XS43	1e-161	Q7XS43_ORYSJ; OSJNBa0074L08.5 protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15026	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	8e-23	FAR1-related sequence 3