PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KN541603.1_FGP002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 18054.9 Da PI: 4.9441 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.7 | 5.4e-40 | 33 | 132 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+++C++apyf +e +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l+ KN541603.1_FGP002 33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQ 124 7*********************998879**************************************************************** PP DUF260 92 aelallke 99 +el++l+ KN541603.1_FGP002 125 SELNYLQG 132 ***99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.64 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-40 | 33 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MSSSVVVSAS GSGSGGSGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA 60 AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV 120 AGLQSELNYL QGEKSNDDDD GEEDDGDVGD GDGCKGCPLA PFYNAWEFAP KEEAWG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-39 | 29 | 133 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-39 | 29 | 133 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KN541603.1_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB200236 | 0.0 | AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613830.1 | 9e-69 | LOB domain-containing protein 30 | ||||
Swissprot | O81322 | 5e-55 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A0E0B865 | 2e-67 | A0A0E0B865_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0IPW8 | 2e-67 | A0A0E0IPW8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QWJ1 | 2e-67 | A0A0E0QWJ1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z5A4 | 2e-67 | A2Z5A4_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QSR9 | 2e-67 | I1QSR9_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q7XGL4 | 2e-67 | Q7XGL4_ORYSJ; LOB domain protein | ||||
STRING | OGLUM10G03230.1 | 3e-68 | (Oryza glumipatula) | ||||
STRING | ORUFI10G03180.1 | 3e-68 | (Oryza rufipogon) | ||||
STRING | OS10T0162600-00 | 3e-68 | (Oryza sativa) | ||||
STRING | ONIVA10G03250.1 | 3e-68 | (Oryza nivara) | ||||
STRING | ORGLA10G0025200.1 | 3e-68 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00210.1 | 4e-54 | LOB domain-containing protein 31 |