PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN540508.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 589aa    MW: 68284.3 Da    PI: 6.7342
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN540508.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.6e-2186173188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        ++Y++YA++ GF +++s+ ++s+ +++  +++f C  e +++e+  +  +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
  KN540508.1_FGP001  86 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 173
                        69************************************999998877567888899999***********99.9**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1986173IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.965392428IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5403430IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MEDNDDRASA EITTDQENHL KDALIQVFAA TSEHQEGEGE GAEVVQDEEI GEGVEGVRDE  60
EIGDTNSKPD KPYVGMEFRD KDEAKNYYDD YARKWGFITK ISSCRRSQIT KQYNRYEFAC  120
HSERSSRESG ASAGSRSRRS SRVLKTGCKA RMVVVKRDEK WVVTIVDLDH NHPPLNPSAL  180
MSLKPHRLIK DEDHDLLEFL RTNKIPTQRI MSVLCDLYGS MQNIPLARKD SFNVEEFERR  240
WAAVLDRYNL ASNKYMQDLY EIREKWVPCY FMDCFFPFMS ITQQSEVMEA LFKDFVHPGD  300
SIQNFIVQYE KLVQSCLDRD DKQLFLTVKT DANLWSKFPM EEQASKFYTR AIFERFQEHL  360
KNTTMYNVVC EATPYSYLVQ NVFGDQSQNR RYVVHCKLED ETFTCVCKQY EREGLLCEHI  420
LKVMTHRNVN LIPDKYLFRR WTLKGSDSAA TRSHVPLNMA EASTRKMRYS TICKKSVCMA  480
SEACRTQEGY NLALRSIEEL TDKLAAINLT RQDQHLPRPN ICDKNGKGIT MGESNTIAEN  540
VLSEICLKDP TKIRPAAFDN NSESARKRNK VMKAVQDLRS PFQQMPCWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN540508.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639432.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ0DJ810.0Q0DJ81_ORYSJ; Os05g0317300 protein
TrEMBLQ5W6W60.0Q5W6W6_ORYSJ; Uncharacterized protein
STRINGORGLA05G0097200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-41FAR1-related sequence 3